Listeria monocytogenes FSL R2-561

Broad Institute

GC Content: 37.8%, Released Date: Sept. 3, 2008 #18203

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AARS01000001
503.8 KB
503 CDS

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whole genome shotgun sequence
NZ_AARS01000002
465.5 KB
470 CDS

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whole genome shotgun sequence
NZ_AARS01000003
330.3 KB
348 CDS

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whole genome shotgun sequence
NZ_AARS01000004
260.1 KB
258 CDS

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whole genome shotgun sequence
NZ_AARS01000005
248.8 KB
267 CDS

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whole genome shotgun sequence
NZ_AARS01000006
188.1 KB
185 CDS

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whole genome shotgun sequence
NZ_AARS01000007
153.4 KB
161 CDS

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whole genome shotgun sequence
NZ_AARS01000008
119.7 KB
113 CDS

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whole genome shotgun sequence
NZ_AARS01000009
98.4 KB
95 CDS

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whole genome shotgun sequence
NZ_AARS01000010
98.4 KB
94 CDS

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whole genome shotgun sequence
NZ_AARS01000011
62.8 KB
65 CDS

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whole genome shotgun sequence
NZ_AARS01000012
57.2 KB
49 CDS

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whole genome shotgun sequence
NZ_AARS01000013
46.5 KB
56 CDS

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whole genome shotgun sequence
NZ_AARS01000014
37.0 KB
56 CDS

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whole genome shotgun sequence
NZ_AARS01000015
34.0 KB
34 CDS

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whole genome shotgun sequence
NZ_AARS01000016
34.0 KB
25 CDS

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whole genome shotgun sequence
NZ_AARS01000017
32.0 KB
36 CDS

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whole genome shotgun sequence
NZ_AARS01000018
27.0 KB
32 CDS

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whole genome shotgun sequence
NZ_AARS01000019
25.4 KB
25 CDS

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whole genome shotgun sequence
NZ_AARS01000020
16.0 KB
23 CDS

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whole genome shotgun sequence
NZ_AARS01000021
15.9 KB
22 CDS

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whole genome shotgun sequence
NZ_AARS01000022
4.8 KB
5 CDS

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whole genome shotgun sequence
NZ_AARS01000023
3.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AARS01000024
2.5 KB
3 CDS

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whole genome shotgun sequence
NZ_AARS01000025
2.3 KB
2 CDS

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whole genome shotgun sequence
NZ_AARS01000026
1.8 KB
0 CDS

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whole genome shotgun sequence
NZ_AARS01000027
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AARS01000028
937 bytes
3 CDS

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whole genome shotgun sequence
NZ_AARS01000029
733 bytes
0 CDS

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whole genome shotgun sequence
NZ_AARS01000030
723 bytes
0 CDS

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whole genome shotgun sequence
NZ_AARS01000031
713 bytes
1 CDS

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whole genome shotgun sequence
NZ_AARS01000032
688 bytes
0 CDS

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whole genome shotgun sequence
NZ_AARS01000033
681 bytes
1 CDS

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whole genome shotgun sequence
NZ_AARS01000034
678 bytes
1 CDS

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whole genome shotgun sequence
NZ_AARS01000035
603 bytes
1 CDS

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whole genome shotgun sequence
NZ_AARS01000036
541 bytes
1 CDS

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whole genome shotgun sequence
NZ_AARS01000037
527 bytes
0 CDS

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Taxonomy

External Links

Listeria monocytogenes FSL R2-561

Search Genome

Sequences

PubMed Search for Listeria monocytogenes FSL R2-561

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