Listeria monocytogenes HPB2262

Broad Institute

GC Content: 37.8%, Released Date: Nov. 8, 2006 #18205

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AATL02000001
345.5 KB
369 CDS

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whole genome shotgun sequence
NZ_AATL02000002
265.7 KB
272 CDS

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whole genome shotgun sequence
NZ_AATL02000003
216.3 KB
202 CDS

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whole genome shotgun sequence
NZ_AATL02000004
200.4 KB
191 CDS

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whole genome shotgun sequence
NZ_AATL02000005
192.5 KB
189 CDS

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whole genome shotgun sequence
NZ_AATL02000006
160.9 KB
172 CDS

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whole genome shotgun sequence
NZ_AATL02000007
139.6 KB
141 CDS

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whole genome shotgun sequence
NZ_AATL02000008
129.2 KB
138 CDS

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whole genome shotgun sequence
NZ_AATL02000009
126.6 KB
113 CDS

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whole genome shotgun sequence
NZ_AATL02000010
109.3 KB
104 CDS

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whole genome shotgun sequence
NZ_AATL02000011
102.6 KB
114 CDS

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whole genome shotgun sequence
NZ_AATL02000012
97.1 KB
94 CDS

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whole genome shotgun sequence
NZ_AATL02000013
95.5 KB
112 CDS

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whole genome shotgun sequence
NZ_AATL02000014
82.6 KB
80 CDS

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whole genome shotgun sequence
NZ_AATL02000015
58.2 KB
60 CDS

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whole genome shotgun sequence
NZ_AATL02000016
53.8 KB
53 CDS

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whole genome shotgun sequence
NZ_AATL02000017
50.1 KB
47 CDS

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whole genome shotgun sequence
NZ_AATL02000018
40.8 KB
47 CDS

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whole genome shotgun sequence
NZ_AATL02000019
39.1 KB
37 CDS

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whole genome shotgun sequence
NZ_AATL02000020
37.1 KB
37 CDS

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whole genome shotgun sequence
NZ_AATL02000021
35.8 KB
39 CDS

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whole genome shotgun sequence
NZ_AATL02000022
35.0 KB
39 CDS

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whole genome shotgun sequence
NZ_AATL02000023
28.0 KB
29 CDS

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whole genome shotgun sequence
NZ_AATL02000024
27.1 KB
27 CDS

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whole genome shotgun sequence
NZ_AATL02000025
26.9 KB
34 CDS

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whole genome shotgun sequence
NZ_AATL02000026
26.5 KB
23 CDS

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whole genome shotgun sequence
NZ_AATL02000027
24.7 KB
36 CDS

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whole genome shotgun sequence
NZ_AATL02000028
16.8 KB
19 CDS

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whole genome shotgun sequence
NZ_AATL02000029
16.2 KB
18 CDS

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whole genome shotgun sequence
NZ_AATL02000030
16.1 KB
17 CDS

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whole genome shotgun sequence
NZ_AATL02000031
15.9 KB
23 CDS

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whole genome shotgun sequence
NZ_AATL02000032
14.0 KB
10 CDS

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whole genome shotgun sequence
NZ_AATL02000033
7.6 KB
8 CDS

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whole genome shotgun sequence
NZ_AATL02000034
5.9 KB
6 CDS

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whole genome shotgun sequence
NZ_AATL02000035
5.2 KB
6 CDS

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whole genome shotgun sequence
NZ_AATL02000036
4.9 KB
11 CDS

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whole genome shotgun sequence
NZ_AATL02000037
4.5 KB
5 CDS

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whole genome shotgun sequence
NZ_AATL02000038
4.2 KB
7 CDS

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whole genome shotgun sequence
NZ_AATL02000039
3.2 KB
4 CDS

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whole genome shotgun sequence
NZ_AATL02000040
3.2 KB
1 CDS

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whole genome shotgun sequence
NZ_AATL02000041
3.0 KB
8 CDS

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whole genome shotgun sequence
NZ_AATL02000042
3.0 KB
4 CDS

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whole genome shotgun sequence
NZ_AATL02000043
2.8 KB
1 CDS

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whole genome shotgun sequence
NZ_AATL02000044
2.8 KB
1 CDS

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whole genome shotgun sequence
NZ_AATL02000045
2.6 KB
7 CDS

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whole genome shotgun sequence
NZ_AATL02000046
2.6 KB
3 CDS

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whole genome shotgun sequence
NZ_AATL02000047
2.4 KB
4 CDS

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whole genome shotgun sequence
NZ_AATL02000048
2.3 KB
2 CDS

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whole genome shotgun sequence
NZ_AATL02000049
2.3 KB
2 CDS

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whole genome shotgun sequence
NZ_AATL02000050
2.1 KB
6 CDS

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whole genome shotgun sequence
NZ_AATL02000051
1.8 KB
5 CDS

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whole genome shotgun sequence
NZ_AATL02000052
1.8 KB
1 CDS

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whole genome shotgun sequence
NZ_AATL02000053
1.8 KB
7 CDS

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whole genome shotgun sequence
NZ_AATL02000054
1.7 KB
0 CDS

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whole genome shotgun sequence
NZ_AATL02000055
1.7 KB
4 CDS

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whole genome shotgun sequence
NZ_AATL02000056
1.5 KB
4 CDS

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whole genome shotgun sequence
NZ_AATL02000057
1.5 KB
2 CDS

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whole genome shotgun sequence
NZ_AATL02000058
1.5 KB
1 CDS

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whole genome shotgun sequence
NZ_AATL02000059
1.3 KB
3 CDS

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whole genome shotgun sequence
NZ_AATL02000060
1.3 KB
3 CDS

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whole genome shotgun sequence
NZ_AATL02000061
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_AATL02000062
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AATL02000063
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_AATL02000064
1.1 KB
4 CDS

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whole genome shotgun sequence
NZ_AATL02000065
1020 bytes
4 CDS

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whole genome shotgun sequence
NZ_AATL02000066
900 bytes
1 CDS

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whole genome shotgun sequence
NZ_AATL02000067
900 bytes
1 CDS

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whole genome shotgun sequence
NZ_AATL02000068
780 bytes
3 CDS

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whole genome shotgun sequence
NZ_AATL02000069
780 bytes
2 CDS

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whole genome shotgun sequence
NZ_AATL02000070
780 bytes
2 CDS

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whole genome shotgun sequence
NZ_AATL02000071
660 bytes
1 CDS

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whole genome shotgun sequence
NZ_AATL02000072
660 bytes
2 CDS

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whole genome shotgun sequence
NZ_AATL02000073
600 bytes
2 CDS

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whole genome shotgun sequence
NZ_AATL02000074
600 bytes
2 CDS

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whole genome shotgun sequence
NZ_AATL02000075
600 bytes
1 CDS

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whole genome shotgun sequence
NZ_AATL02000076
540 bytes
1 CDS

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whole genome shotgun sequence
NZ_AATL02000077
480 bytes
1 CDS

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whole genome shotgun sequence
NZ_AATL02000078
480 bytes
2 CDS

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whole genome shotgun sequence
NZ_AATL02000079
480 bytes
2 CDS

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Taxonomy

External Links

Listeria monocytogenes HPB2262

Search Genome

Sequences

PubMed Search for Listeria monocytogenes HPB2262

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