Listeria monocytogenes J2818

Broad Institute

GC Content: 37.8%, Released Date: Oct. 16, 2006 #18207

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AARX02000001
1.2 MB
1214 CDS

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whole genome shotgun sequence
NZ_AARX02000002
477.5 KB
474 CDS

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whole genome shotgun sequence
NZ_AARX02000003
438.6 KB
462 CDS

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whole genome shotgun sequence
NZ_AARX02000004
171.0 KB
166 CDS

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whole genome shotgun sequence
NZ_AARX02000005
126.6 KB
122 CDS

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whole genome shotgun sequence
NZ_AARX02000006
115.7 KB
121 CDS

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whole genome shotgun sequence
NZ_AARX02000007
98.4 KB
95 CDS

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whole genome shotgun sequence
NZ_AARX02000008
72.4 KB
95 CDS

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whole genome shotgun sequence
NZ_AARX02000009
57.3 KB
49 CDS

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whole genome shotgun sequence
NZ_AARX02000010
41.4 KB
68 CDS

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whole genome shotgun sequence
NZ_AARX02000011
33.9 KB
32 CDS

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whole genome shotgun sequence
NZ_AARX02000012
27.0 KB
31 CDS

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whole genome shotgun sequence
NZ_AARX02000013
16.0 KB
23 CDS

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whole genome shotgun sequence
NZ_AARX02000014
15.2 KB
6 CDS

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whole genome shotgun sequence
NZ_AARX02000015
4.6 KB
5 CDS

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whole genome shotgun sequence
NZ_AARX02000016
4.4 KB
7 CDS

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whole genome shotgun sequence
NZ_AARX02000017
3.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AARX02000018
2.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AARX02000019
1.8 KB
0 CDS

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whole genome shotgun sequence
NZ_AARX02000020
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_AARX02000021
991 bytes
1 CDS

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whole genome shotgun sequence
NZ_AARX02000022
878 bytes
0 CDS

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whole genome shotgun sequence
NZ_AARX02000023
698 bytes
1 CDS

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whole genome shotgun sequence
NZ_AARX02000024
539 bytes
1 CDS

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Taxonomy

External Links

Listeria monocytogenes J2818

Search Genome

Sequences

PubMed Search for Listeria monocytogenes J2818

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