Listeria monocytogenes str. 1/2a F6854

TIGR

Genome Size: 2.95 megabases, GC Content: 37.8%, Released Date: April 30, 2004 #18209

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AADQ01000001
132.4 KB
134 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000002
125.5 KB
122 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000003
124.4 KB
140 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000004
121.7 KB
131 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000005
120.4 KB
141 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000006
103.5 KB
107 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000007
98.5 KB
102 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000008
83.7 KB
76 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000009
78.0 KB
67 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000010
76.1 KB
73 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000011
64.3 KB
64 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000012
62.7 KB
61 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000013
62.6 KB
68 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000014
61.2 KB
79 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000015
57.5 KB
55 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000016
51.6 KB
55 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000017
50.4 KB
44 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000018
46.7 KB
57 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000019
40.4 KB
41 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000020
39.8 KB
44 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000021
38.7 KB
38 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000022
37.2 KB
39 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000023
36.8 KB
33 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000024
33.9 KB
33 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000025
33.8 KB
27 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000026
32.5 KB
30 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000027
32.2 KB
40 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000028
32.1 KB
33 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000029
31.6 KB
28 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000030
31.5 KB
38 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000031
30.1 KB
30 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000032
30.0 KB
20 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000033
29.3 KB
24 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000034
29.2 KB
27 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000035
29.0 KB
27 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000036
26.9 KB
29 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000037
25.6 KB
23 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000038
25.2 KB
27 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000039
22.4 KB
24 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000040
22.3 KB
24 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000041
22.1 KB
21 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000042
21.6 KB
18 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000043
20.7 KB
20 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000044
20.3 KB
25 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000045
18.9 KB
21 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000046
17.8 KB
19 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000047
17.8 KB
19 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000048
17.5 KB
17 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000049
16.9 KB
13 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000050
16.9 KB
15 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000051
16.4 KB
29 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000052
16.1 KB
14 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000053
16.0 KB
12 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000054
15.8 KB
17 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000055
15.6 KB
11 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000056
15.5 KB
12 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000057
15.3 KB
13 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000058
14.8 KB
13 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000059
14.6 KB
20 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000060
14.6 KB
12 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000061
13.9 KB
11 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000062
12.8 KB
15 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000063
12.7 KB
11 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000064
11.3 KB
10 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000065
11.0 KB
12 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000066
10.6 KB
11 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000067
9.7 KB
11 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000068
9.6 KB
9 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000069
9.3 KB
11 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000070
9.2 KB
9 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000071
8.9 KB
8 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000072
8.9 KB
10 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000073
8.9 KB
11 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000074
8.4 KB
17 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000075
8.3 KB
7 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000076
7.0 KB
6 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000077
6.2 KB
9 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000078
5.6 KB
8 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000079
5.5 KB
6 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000080
5.4 KB
6 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000081
5.4 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000082
5.3 KB
7 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000083
5.0 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000084
5.0 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000085
4.8 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000086
4.7 KB
6 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000087
4.7 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000088
4.6 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000089
4.6 KB
9 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000090
4.5 KB
7 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000091
4.3 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000092
4.2 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000093
3.9 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000094
3.9 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000095
3.9 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000096
3.7 KB
6 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000097
3.5 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000098
3.5 KB
6 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000099
3.4 KB
7 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000100
3.4 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000101
3.3 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000102
3.2 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000103
3.0 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000104
2.9 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000105
2.7 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000106
2.7 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000107
2.6 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000108
2.5 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000109
1.8 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000110
1.8 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000111
1.8 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000112
1.8 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000113
1.7 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000114
1.5 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000115
1.5 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000116
1.5 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000117
1.4 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000118
1.3 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000119
1.3 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000120
1.3 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000121
1.3 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000122
1.2 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000123
1.1 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000124
1.1 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000125
1.1 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000126
1.0 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000127
1.0 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000128
948 bytes
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000129
916 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000130
904 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000131
840 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000132
820 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AADQ01000133
605 bytes
1 CDS

Table view
Circular View
Artemis Viewer

References

Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species
Nelson,K.E., Fouts,D.E., Mongodin,E.F., Ravel,J., DeBoy,R.T., Kolonay,J.F., Rasko,D.A., Angiuoli,S.V., Gill,S.R., Paulsen,I.T., Peterson,J., White,O., Nelson,W.C., Nierman,W., Beanan,M.J., Brinkac,L.M., Daugherty,S.C., Dodson,R.J., Durkin,A.S., Madupu,R., Haft,D.H., Selengut,J., Van Aken,S., Khouri,H., Fedorova,N., Forberger,H., Tran,B., Kathariou,S., Wonderling,L.D., Uhlich,G.A., Bayles,D.O., Luchansky,J.B. and Fraser,C.M. Nucleic Acids Res. 32 (8), 2386-2395 (2004)
PubMed, PubGet, HubMed

Taxonomy

External Links

Listeria monocytogenes str. 1/2a F6854

Search Genome

Sequences

References

Related Genomes