marine actinobacterium PHSC20C1

J. Craig Venter Institute

Genome Size: 5.0 megabases, GC Content: 59.1%, Released Date: Feb. 24, 2006 #18583

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAOB01000001
335.1 KB
336 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAOB01000002
327.0 KB
309 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAOB01000003
326.2 KB
322 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAOB01000004
303.7 KB
297 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAOB01000005
281.9 KB
284 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAOB01000006
167.6 KB
171 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAOB01000007
124.9 KB
126 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAOB01000008
121.4 KB
121 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAOB01000009
117.2 KB
112 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAOB01000010
114.7 KB
103 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAOB01000011
105.1 KB
108 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAOB01000012
79.2 KB
83 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAOB01000013
76.4 KB
79 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAOB01000014
54.1 KB
48 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAOB01000015
53.3 KB
48 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAOB01000016
51.2 KB
52 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAOB01000017
39.1 KB
38 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAOB01000018
16.3 KB
19 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAOB01000019
4.2 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAOB01000020
3.2 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAOB01000021
1.3 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAOB01000022
723 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAOB01000023
382 bytes
1 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

marine actinobacterium PHSC20C1

Search Genome

Sequences

PubMed Search for marine actinobacterium PHSC20C1

Related Genomes