Marinitoga piezophila KA3

J. Craig Venter Insitute

Genome Size: 1.8 megabases, GC Content: 46.1%, Released Date: Oct. 1, 2008 #14999

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000001
52.1 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000002
289.4 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000003
995 bytes
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000004
1.1 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000005
195.8 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000006
180.0 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000007
57.4 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000008
94.2 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000009
16.0 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000010
1.9 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000011
146.5 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000012
44.2 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000013
7.2 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000014
10.5 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000015
50.1 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000016
27.6 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000017
35.5 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000018
1.8 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000019
13.5 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000020
7.1 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000021
7.0 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000022
49.4 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000023
12.6 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000024
26.2 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000025
7.5 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000026
13.8 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000027
1.6 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000028
132.9 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000029
22.7 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000030
201.1 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000031
58.0 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXR01000032
1.1 KB
0 CDS

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Taxonomy

External Links

Marinitoga piezophila KA3

Search Genome

Sequences

PubMed Search for Marinitoga piezophila KA3

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