Mariprofundus ferrooxydans PV-1

J. Craig Venter Institute

Genome Size: 5.0 megabases, GC Content: 54.0%, Released Date: Sept. 15, 2006 #18218

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AATS01000001
370.4 KB
370 CDS

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whole genome shotgun sequence
NZ_AATS01000002
350.8 KB
371 CDS

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whole genome shotgun sequence
NZ_AATS01000003
327.6 KB
338 CDS

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whole genome shotgun sequence
NZ_AATS01000004
176.8 KB
175 CDS

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whole genome shotgun sequence
NZ_AATS01000005
174.4 KB
169 CDS

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whole genome shotgun sequence
NZ_AATS01000006
169.6 KB
161 CDS

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whole genome shotgun sequence
NZ_AATS01000007
125.2 KB
119 CDS

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whole genome shotgun sequence
NZ_AATS01000008
100.1 KB
98 CDS

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whole genome shotgun sequence
NZ_AATS01000009
96.7 KB
92 CDS

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whole genome shotgun sequence
NZ_AATS01000010
84.8 KB
83 CDS

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whole genome shotgun sequence
NZ_AATS01000011
83.6 KB
83 CDS

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whole genome shotgun sequence
NZ_AATS01000012
81.6 KB
91 CDS

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whole genome shotgun sequence
NZ_AATS01000013
66.4 KB
64 CDS

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whole genome shotgun sequence
NZ_AATS01000014
66.0 KB
67 CDS

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whole genome shotgun sequence
NZ_AATS01000015
59.3 KB
59 CDS

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whole genome shotgun sequence
NZ_AATS01000016
57.1 KB
57 CDS

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whole genome shotgun sequence
NZ_AATS01000017
56.4 KB
60 CDS

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whole genome shotgun sequence
NZ_AATS01000018
53.8 KB
58 CDS

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whole genome shotgun sequence
NZ_AATS01000019
50.7 KB
54 CDS

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whole genome shotgun sequence
NZ_AATS01000020
44.4 KB
44 CDS

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whole genome shotgun sequence
NZ_AATS01000021
44.3 KB
64 CDS

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whole genome shotgun sequence
NZ_AATS01000022
34.3 KB
52 CDS

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whole genome shotgun sequence
NZ_AATS01000023
32.6 KB
35 CDS

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whole genome shotgun sequence
NZ_AATS01000024
30.8 KB
28 CDS

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whole genome shotgun sequence
NZ_AATS01000025
21.1 KB
21 CDS

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whole genome shotgun sequence
NZ_AATS01000026
15.7 KB
19 CDS

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whole genome shotgun sequence
NZ_AATS01000027
14.3 KB
21 CDS

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whole genome shotgun sequence
NZ_AATS01000028
3.9 KB
6 CDS

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whole genome shotgun sequence
NZ_AATS01000029
2.4 KB
1 CDS

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whole genome shotgun sequence
NZ_AATS01000030
1.7 KB
2 CDS

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whole genome shotgun sequence
NZ_AATS01000031
1.7 KB
2 CDS

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whole genome shotgun sequence
NZ_AATS01000032
1.7 KB
2 CDS

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Taxonomy

External Links

Mariprofundus ferrooxydans PV-1

Search Genome

Sequences

PubMed Search for Mariprofundus ferrooxydans PV-1

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