Marivirga tractuosa DSM 4126

US DOE Joint Genome Institute (JGI-PGF) , JGI , JGI-PGF

Genome Size: 4.5 megabases, Released Date: Nov. 30, 2010 #19949

 Completed genome

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Annotation search: search for genes and features in this genome

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Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

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Report matches:  in any location within intergenic regions only overlapping genes only  

Allow  1 2 3 4 5 6 7 8 9  mismatched bases 

Sequences

PubMed Search for Marivirga tractuosa DSM 4126

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