Megasphaera genomosp. type_1 str. 28L

J. Craig Venter Institute

Genome Size: 1.7 megabases, GC Content: 46.1%, Released Date: March 9, 2010 #20456

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig00067, whole genome shotgun sequence
NZ_ADGP01000001
987 bytes
1 CDS

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contig00066, whole genome shotgun sequence
NZ_ADGP01000002
3.0 KB
0 CDS

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contig00038, whole genome shotgun sequence
NZ_ADGP01000003
42.3 KB
52 CDS

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contig00009, whole genome shotgun sequence
NZ_ADGP01000004
1.9 KB
1 CDS

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contig00049, whole genome shotgun sequence
NZ_ADGP01000005
96.6 KB
99 CDS

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contig00034, whole genome shotgun sequence
NZ_ADGP01000006
3.5 KB
3 CDS

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contig00002, whole genome shotgun sequence
NZ_ADGP01000007
11.3 KB
10 CDS

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contig00001, whole genome shotgun sequence
NZ_ADGP01000008
100.3 KB
89 CDS

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contig00035, whole genome shotgun sequence
NZ_ADGP01000009
155.4 KB
142 CDS

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contig00059, whole genome shotgun sequence
NZ_ADGP01000010
1.8 KB
0 CDS

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contig00030, whole genome shotgun sequence
NZ_ADGP01000011
593 bytes
1 CDS

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contig00053, whole genome shotgun sequence
NZ_ADGP01000012
1.3 KB
1 CDS

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contig00046, whole genome shotgun sequence
NZ_ADGP01000013
71.6 KB
77 CDS

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contig00055, whole genome shotgun sequence
NZ_ADGP01000014
31.5 KB
18 CDS

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contig00037, whole genome shotgun sequence
NZ_ADGP01000015
67.1 KB
76 CDS

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contig00026, whole genome shotgun sequence
NZ_ADGP01000016
46.1 KB
45 CDS

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contig00042, whole genome shotgun sequence
NZ_ADGP01000017
40.9 KB
37 CDS

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contig00012, whole genome shotgun sequence
NZ_ADGP01000018
45.4 KB
49 CDS

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contig00064, whole genome shotgun sequence
NZ_ADGP01000019
152.5 KB
140 CDS

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contig00013, whole genome shotgun sequence
NZ_ADGP01000020
205.2 KB
201 CDS

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contig00039, whole genome shotgun sequence
NZ_ADGP01000021
169.5 KB
154 CDS

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contig00024, whole genome shotgun sequence
NZ_ADGP01000022
18.7 KB
17 CDS

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contig00040, whole genome shotgun sequence
NZ_ADGP01000023
152.0 KB
148 CDS

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contig00058, whole genome shotgun sequence
NZ_ADGP01000024
5.9 KB
1 CDS

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contig00008, whole genome shotgun sequence
NZ_ADGP01000025
6.0 KB
5 CDS

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contig00003, whole genome shotgun sequence
NZ_ADGP01000026
565 bytes
1 CDS

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contig00011, whole genome shotgun sequence
NZ_ADGP01000027
5.3 KB
2 CDS

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contig00023, whole genome shotgun sequence
NZ_ADGP01000028
21.7 KB
20 CDS

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contig00029, whole genome shotgun sequence
NZ_ADGP01000029
901 bytes
1 CDS

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contig00010, whole genome shotgun sequence
NZ_ADGP01000030
11.5 KB
14 CDS

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contig00004, whole genome shotgun sequence
NZ_ADGP01000031
1.6 KB
1 CDS

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contig00075, whole genome shotgun sequence
NZ_ADGP01000032
534 bytes
1 CDS

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contig00036, whole genome shotgun sequence
NZ_ADGP01000033
204.5 KB
190 CDS

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contig00005, whole genome shotgun sequence
NZ_ADGP01000034
7.6 KB
13 CDS

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Taxonomy

External Links

Megasphaera genomosp. type_1 str. 28L

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Sequences

PubMed Search for Megasphaera genomosp. type_1 str. 28L

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