Mesorhizobium opportunistum WSM2075

DOE Joint Genome Institute

Genome Size: 6.9 megabases, GC Content: 62.9%, Released Date: Sept. 22, 2009 #20458

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACZA01000001
437.4 KB
437 CDS

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whole genome shotgun sequence
NZ_ACZA01000002
310.1 KB
313 CDS

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whole genome shotgun sequence
NZ_ACZA01000003
302.2 KB
276 CDS

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whole genome shotgun sequence
NZ_ACZA01000004
299.6 KB
288 CDS

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whole genome shotgun sequence
NZ_ACZA01000005
257.3 KB
250 CDS

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whole genome shotgun sequence
NZ_ACZA01000006
254.5 KB
276 CDS

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whole genome shotgun sequence
NZ_ACZA01000007
253.6 KB
265 CDS

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whole genome shotgun sequence
NZ_ACZA01000008
236.1 KB
230 CDS

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whole genome shotgun sequence
NZ_ACZA01000009
233.5 KB
235 CDS

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whole genome shotgun sequence
NZ_ACZA01000010
222.3 KB
192 CDS

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whole genome shotgun sequence
NZ_ACZA01000011
217.5 KB
200 CDS

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whole genome shotgun sequence
NZ_ACZA01000012
188.6 KB
185 CDS

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whole genome shotgun sequence
NZ_ACZA01000013
149.7 KB
144 CDS

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whole genome shotgun sequence
NZ_ACZA01000014
145.4 KB
152 CDS

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whole genome shotgun sequence
NZ_ACZA01000015
140.0 KB
136 CDS

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whole genome shotgun sequence
NZ_ACZA01000016
136.5 KB
124 CDS

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whole genome shotgun sequence
NZ_ACZA01000017
131.4 KB
124 CDS

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whole genome shotgun sequence
NZ_ACZA01000018
130.9 KB
147 CDS

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whole genome shotgun sequence
NZ_ACZA01000019
130.2 KB
122 CDS

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whole genome shotgun sequence
NZ_ACZA01000020
128.8 KB
136 CDS

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whole genome shotgun sequence
NZ_ACZA01000021
127.6 KB
127 CDS

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whole genome shotgun sequence
NZ_ACZA01000022
117.3 KB
105 CDS

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whole genome shotgun sequence
NZ_ACZA01000023
112.2 KB
130 CDS

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whole genome shotgun sequence
NZ_ACZA01000024
110.9 KB
125 CDS

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whole genome shotgun sequence
NZ_ACZA01000025
108.5 KB
95 CDS

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whole genome shotgun sequence
NZ_ACZA01000026
98.5 KB
107 CDS

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whole genome shotgun sequence
NZ_ACZA01000027
94.1 KB
77 CDS

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whole genome shotgun sequence
NZ_ACZA01000028
92.5 KB
103 CDS

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whole genome shotgun sequence
NZ_ACZA01000029
82.6 KB
74 CDS

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whole genome shotgun sequence
NZ_ACZA01000030
82.6 KB
78 CDS

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whole genome shotgun sequence
NZ_ACZA01000031
79.3 KB
86 CDS

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whole genome shotgun sequence
NZ_ACZA01000032
72.5 KB
67 CDS

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whole genome shotgun sequence
NZ_ACZA01000033
68.3 KB
74 CDS

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whole genome shotgun sequence
NZ_ACZA01000034
63.2 KB
67 CDS

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whole genome shotgun sequence
NZ_ACZA01000035
58.8 KB
64 CDS

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whole genome shotgun sequence
NZ_ACZA01000036
56.7 KB
52 CDS

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whole genome shotgun sequence
NZ_ACZA01000037
53.3 KB
56 CDS

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whole genome shotgun sequence
NZ_ACZA01000038
53.0 KB
48 CDS

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whole genome shotgun sequence
NZ_ACZA01000039
49.1 KB
49 CDS

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whole genome shotgun sequence
NZ_ACZA01000040
44.9 KB
46 CDS

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whole genome shotgun sequence
NZ_ACZA01000041
42.7 KB
43 CDS

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whole genome shotgun sequence
NZ_ACZA01000042
42.1 KB
52 CDS

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whole genome shotgun sequence
NZ_ACZA01000043
38.3 KB
34 CDS

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whole genome shotgun sequence
NZ_ACZA01000044
38.2 KB
35 CDS

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whole genome shotgun sequence
NZ_ACZA01000045
37.4 KB
41 CDS

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whole genome shotgun sequence
NZ_ACZA01000046
37.3 KB
42 CDS

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whole genome shotgun sequence
NZ_ACZA01000047
34.5 KB
42 CDS

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whole genome shotgun sequence
NZ_ACZA01000048
30.8 KB
33 CDS

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whole genome shotgun sequence
NZ_ACZA01000049
30.5 KB
32 CDS

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whole genome shotgun sequence
NZ_ACZA01000050
29.4 KB
30 CDS

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whole genome shotgun sequence
NZ_ACZA01000051
29.1 KB
28 CDS

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whole genome shotgun sequence
NZ_ACZA01000052
29.0 KB
24 CDS

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whole genome shotgun sequence
NZ_ACZA01000053
28.5 KB
29 CDS

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whole genome shotgun sequence
NZ_ACZA01000054
28.4 KB
40 CDS

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whole genome shotgun sequence
NZ_ACZA01000055
27.5 KB
26 CDS

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whole genome shotgun sequence
NZ_ACZA01000056
27.4 KB
34 CDS

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whole genome shotgun sequence
NZ_ACZA01000057
25.8 KB
23 CDS

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whole genome shotgun sequence
NZ_ACZA01000058
25.6 KB
30 CDS

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whole genome shotgun sequence
NZ_ACZA01000059
23.4 KB
21 CDS

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whole genome shotgun sequence
NZ_ACZA01000060
17.3 KB
16 CDS

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whole genome shotgun sequence
NZ_ACZA01000061
17.0 KB
19 CDS

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whole genome shotgun sequence
NZ_ACZA01000062
15.6 KB
30 CDS

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whole genome shotgun sequence
NZ_ACZA01000063
15.0 KB
17 CDS

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whole genome shotgun sequence
NZ_ACZA01000064
14.2 KB
18 CDS

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whole genome shotgun sequence
NZ_ACZA01000065
12.0 KB
10 CDS

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whole genome shotgun sequence
NZ_ACZA01000066
8.9 KB
11 CDS

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whole genome shotgun sequence
NZ_ACZA01000067
8.6 KB
9 CDS

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whole genome shotgun sequence
NZ_ACZA01000068
6.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ACZA01000069
5.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ACZA01000070
4.4 KB
4 CDS

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whole genome shotgun sequence
NZ_ACZA01000071
4.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ACZA01000072
4.1 KB
4 CDS

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whole genome shotgun sequence
NZ_ACZA01000073
3.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ACZA01000074
3.2 KB
4 CDS

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whole genome shotgun sequence
NZ_ACZA01000075
2.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ACZA01000076
2.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ACZA01000077
1.9 KB
1 CDS

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whole genome shotgun sequence
NZ_ACZA01000078
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ACZA01000079
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ACZA01000080
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ACZA01000081
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ACZA01000082
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ACZA01000083
949 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACZA01000084
821 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACZA01000085
775 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACZA01000086
699 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACZA01000087
626 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACZA01000088
506 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACZA01000089
500 bytes
1 CDS

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Taxonomy

External Links

Mesorhizobium opportunistum WSM2075

Search Genome

Sequences

PubMed Search for Mesorhizobium opportunistum WSM2075

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