Methanobrevibacter ruminantium M1

Pastoral Greenhouse Gas Research Consortium , AgResearch , AgResearch Ltd., Food, Metabolism & Microbiology, New Zealand, Palmerston North

Genome Size: 2.9 megabases, GC Content: 32.6%, Released Date: Feb. 5, 2010 #19953

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
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Sequences

complete genome
CP001719
2.8 MB
2217 CDS

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References

The genome sequence of the rumen methanogen Methanobrevibacter ruminantium reveals new possibilities for controlling ruminant methane emissions
Leahy,S.C., Kelly,W.J., Altermann,E., Ronimus,R.S., Yeoman,C.J., Pacheco,D.M., Li,D., Kong,Z., McTavish,S., Sang,C., Lambie,S.C., Janssen,P.H., Dey,D. and Attwood,G.T. PLoS ONE 5 (1), E8926 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Methanobrevibacter ruminantium M1

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Sequences

References

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