Methanobrevibacter smithii DSM 2375

Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine

GC Content: 31.3%, Released Date: Oct. 30, 2008 #18222

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABYW01000001
179.0 KB
208 CDS

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whole genome shotgun sequence
NZ_ABYW01000002
75.1 KB
82 CDS

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whole genome shotgun sequence
NZ_ABYW01000003
3.8 KB
6 CDS

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whole genome shotgun sequence
NZ_ABYW01000004
63.5 KB
58 CDS

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whole genome shotgun sequence
NZ_ABYW01000005
406.4 KB
422 CDS

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whole genome shotgun sequence
NZ_ABYW01000006
20.5 KB
19 CDS

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whole genome shotgun sequence
NZ_ABYW01000007
309.1 KB
295 CDS

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whole genome shotgun sequence
NZ_ABYW01000008
3.8 KB
1 CDS

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whole genome shotgun sequence
NZ_ABYW01000009
976 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABYW01000010
127.7 KB
126 CDS

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whole genome shotgun sequence
NZ_ABYW01000011
9.9 KB
2 CDS

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whole genome shotgun sequence
NZ_ABYW01000012
220.9 KB
218 CDS

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whole genome shotgun sequence
NZ_ABYW01000013
60.8 KB
73 CDS

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whole genome shotgun sequence
NZ_ABYW01000014
3.0 KB
1 CDS

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whole genome shotgun sequence
NZ_ABYW01000015
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ABYW01000016
7.5 KB
11 CDS

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whole genome shotgun sequence
NZ_ABYW01000017
2.0 KB
3 CDS

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whole genome shotgun sequence
NZ_ABYW01000018
165.0 KB
175 CDS

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whole genome shotgun sequence
NZ_ABYW01000019
505 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABYW01000020
728 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABYW01000021
608 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABYW01000022
859 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABYW01000023
628 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABYW01000024
1.1 KB
2 CDS

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Taxonomy

External Links

Methanobrevibacter smithii DSM 2375

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Sequences

PubMed Search for Methanobrevibacter smithii DSM 2375

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