Methanocella paludicola SANAE

NCBI

Genome Size: 2.96 megabases, Released Date: Dec. 25, 2009 #17165

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_013665
2.8 MB
3004 CDS

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References

Methanocella paludicola gen. nov., sp. nov., a methane-producing archaeon, the first isolate of the lineage 'Rice Cluster I', and proposal of the new archaeal order Methanocellales ord. nov
Sakai,S., Imachi,H., Hanada,S., Ohashi,A., Harada,H. and Kamagata,Y. Int. J. Syst. Evol. Microbiol. 58 (PT 4), 929-936 (2008)
PubMed, PubGet, HubMed
Isolation of key methanogens for global methane emission from rice paddy fields: a novel isolate affiliated with the clone cluster rice cluster I
Sakai,S., Imachi,H., Sekiguchi,Y., Ohashi,A., Harada,H. and Kamagata,Y. Appl. Environ. Microbiol. 73 (13), 4326-4331 (2007)
PubMed, PubGet, HubMed

Taxonomy

External Links

Methanocella paludicola SANAE

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Sequences

References

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