Methanocorpusculum labreanum Z

DOE Joint Genome Institute

Genome Size: 1.8 megabases, GC Content: 50.0%, Released Date: Feb. 1, 2007 #17173

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
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Allow mismatched bases

Sequences

complete genome
NC_008942
1.7 MB
1739 CDS

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References

Genomic characterization of methanomicrobiales reveals three classes of methanogens
Anderson,I., Ulrich,L.E., Lupa,B., Susanti,D., Porat,I., Hooper,S.D., Lykidis,A., Sieprawska-Lupa,M., Dharmarajan,L., Goltsman,E., Lapidus,A., Saunders,E., Han,C., Land,M., Lucas,S., Mukhopadhyay,B., Whitman,W.B., Woese,C., Bristow,J. and Kyrpides,N. PLoS ONE 4 (6), E5797 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Methanocorpusculum labreanum Z

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Sequences

References

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