Methanohalophilus mahii DSM 5219

US DOE Joint Genome Institute (JGI-PGF) , DOE Joint Genome Institute , JGI-PGF

Genome Size: 2.0 megabases, GC Content: 42.6%, Released Date: March 31, 2010 #19958

 Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region:   bp. upstream of a gene 
Leave blank for no restriction.

Report matches:  in any location within intergenic regions only overlapping genes only  

Allow  1 2 3 4 5 6 7 8 9  mismatched bases 

Sequences

PubMed Search for Methanohalophilus mahii DSM 5219

Related Genomes

• Aciduliprofundum boonei T469
• Thermococcus sp. AM4
• Archaeoglobus fulgidus DSM 4304
• Archaeoglobus profundus DSM 5631
• Candidatus Methanoregula boonei 6A8
• Haloarcula marismortui ATCC 43049
• Halobacterium salinarum R1
• Halobacterium sp. NRC-1
• Halomicrobium mukohataei DSM 12286
• Haloquadratum walsbyi DSM 16790
• Halorhabdus utahensis DSM 12940
• Halorubrum lacusprofundi ATCC 49239
• Haloterrigena turkmenica DSM 5511
• Methanobrevibacter smithii ATCC 35061
• Methanocaldococcus fervens AG86
• Methanocaldococcus jannaschii DSM 2661
• Methanocaldococcus vulcanius M7
• Methanocella paludicola SANAE
• Methanococcoides burtonii DSM 6242
• Methanococcus aeolicus Nankai-3
• Methanococcus maripaludis C5
• Methanococcus maripaludis C6
• Methanococcus maripaludis C7
• Methanococcus maripaludis S2
• Methanococcus vannielii SB
• Methanocorpusculum labreanum Z
• Methanoculleus marisnigri JR1
• Methanopyrus kandleri AV19
• Methanosaeta thermophila PT
• Methanosarcina acetivorans C2A
• Methanosarcina barkeri str. Fusaro
• Methanosarcina mazei Go1
• Methanosphaera stadtmanae DSM 3091
• Methanosphaerula palustris E1-9c
• Methanospirillum hungatei JF-1
• Methanothermobacter thermautotrophicus str. Delta H
• Natronomonas pharaonis DSM 2160
• Picrophilus torridus DSM 9790
• Pyrococcus abyssi GE5
• Pyrococcus furiosus DSM 3638
• Pyrococcus horikoshii OT3
• Thermococcus gammatolerans EJ3
• Thermococcus kodakarensis KOD1
• Thermococcus onnurineus NA1
• Thermococcus sibiricus MM 739
• Thermoplasma acidophilum DSM 1728
• Thermoplasma volcanium GSS1
• uncultured methanogenic archaeon RC-I
• Ferroplasma acidarmanus fer1
• Methanobrevibacter smithii DSM 2374
• Methanobrevibacter smithii DSM 2375
• Aciduliprofundum boonei T469
• Ferroglobus placidus DSM 10642
• Halalkalicoccus jeotgali B3
• Haloferax volcanii DS2
• Halogeometricum borinquense DSM 11551
• Methanobrevibacter ruminantium M1
• Methanocaldococcus infernus ME
• Methanocaldococcus sp. FS406-22
• Methanococcus voltae A3
• Methanohalobium evestigatum Z-7303
• Methanoplanus petrolearius DSM 11571
• Methanothermobacter marburgensis str. Marburg
• Methanothermus fervidus DSM 2088
• Natrialba magadii ATCC 43099
• Thermococcus barophilus MP
• Methanothermococcus okinawensis IH1