Methanosarcina barkeri str. Fusaro

DOE Joint Genome Institute

Genome Size: 4.84 megabases, GC Content: 39.2%, Released Date: Aug. 12, 2005 #17178

 Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region:   bp. upstream of a gene 
Leave blank for no restriction.

Report matches:  in any location within intergenic regions only overlapping genes only  

Allow  1 2 3 4 5 6 7 8 9  mismatched bases 

Sequences

References

• The Methanosarcina barkeri genome: comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes
  Maeder,D.L., Anderson,I., Brettin,T.S., Bruce,D.C., Gilna,P., Han,C.S., Lapidus,A., Metcalf,W.W., Saunders,E., Tapia,R. and Sowers,K.R. J. Bacteriol. 188 (22), 7922-7931 (2006)
  PubMed, PubGet, HubMed

Related Genomes

• Methanosarcina acetivorans C2A
• Methanosarcina mazei Go1
• Aciduliprofundum boonei T469
• Thermococcus sp. AM4
• Archaeoglobus fulgidus DSM 4304
• Archaeoglobus profundus DSM 5631
• Candidatus Methanoregula boonei 6A8
• Haloarcula marismortui ATCC 43049
• Halobacterium salinarum R1
• Halobacterium sp. NRC-1
• Halomicrobium mukohataei DSM 12286
• Haloquadratum walsbyi DSM 16790
• Halorhabdus utahensis DSM 12940
• Halorubrum lacusprofundi ATCC 49239
• Haloterrigena turkmenica DSM 5511
• Methanobrevibacter smithii ATCC 35061
• Methanocaldococcus fervens AG86
• Methanocaldococcus jannaschii DSM 2661
• Methanocaldococcus vulcanius M7
• Methanocella paludicola SANAE
• Methanococcoides burtonii DSM 6242
• Methanococcus aeolicus Nankai-3
• Methanococcus maripaludis C5
• Methanococcus maripaludis C6
• Methanococcus maripaludis C7
• Methanococcus maripaludis S2
• Methanococcus vannielii SB
• Methanocorpusculum labreanum Z
• Methanoculleus marisnigri JR1
• Methanopyrus kandleri AV19
• Methanosaeta thermophila PT
• Methanosphaera stadtmanae DSM 3091
• Methanosphaerula palustris E1-9c
• Methanospirillum hungatei JF-1
• Methanothermobacter thermautotrophicus str. Delta H
• Natronomonas pharaonis DSM 2160
• Picrophilus torridus DSM 9790
• Pyrococcus abyssi GE5
• Pyrococcus furiosus DSM 3638
• Pyrococcus horikoshii OT3
• Thermococcus gammatolerans EJ3
• Thermococcus kodakarensis KOD1
• Thermococcus onnurineus NA1
• Thermococcus sibiricus MM 739
• Thermoplasma acidophilum DSM 1728
• Thermoplasma volcanium GSS1
• uncultured methanogenic archaeon RC-I
• Ferroplasma acidarmanus fer1
• Methanobrevibacter smithii DSM 2374
• Methanobrevibacter smithii DSM 2375
• Aciduliprofundum boonei T469
• Ferroglobus placidus DSM 10642
• Halalkalicoccus jeotgali B3
• Haloferax volcanii DS2
• Halogeometricum borinquense DSM 11551
• Methanobrevibacter ruminantium M1
• Methanocaldococcus infernus ME
• Methanocaldococcus sp. FS406-22
• Methanococcus voltae A3
• Methanohalobium evestigatum Z-7303
• Methanohalophilus mahii DSM 5219
• Methanoplanus petrolearius DSM 11571
• Methanothermobacter marburgensis str. Marburg
• Methanothermus fervidus DSM 2088
• Natrialba magadii ATCC 43099
• Thermococcus barophilus MP
• Methanothermococcus okinawensis IH1