Methanothermococcus okinawensis IH1

DOE Joint Genome Institute

Genome Size: 1.6 megabases, Released Date: Aug. 10, 2010 #20459

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

ctg00086, whole genome shotgun sequence
NZ_AEDA01000001
149.9 KB
164 CDS

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ctg00089, whole genome shotgun sequence
NZ_AEDA01000002
138.7 KB
153 CDS

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ctg00112, whole genome shotgun sequence
NZ_AEDA01000003
132.8 KB
151 CDS

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ctg00092, whole genome shotgun sequence
NZ_AEDA01000004
128.3 KB
131 CDS

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ctg00082, whole genome shotgun sequence
NZ_AEDA01000005
125.2 KB
134 CDS

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ctg00087, whole genome shotgun sequence
NZ_AEDA01000006
109.6 KB
122 CDS

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ctg00104, whole genome shotgun sequence
NZ_AEDA01000007
96.0 KB
108 CDS

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ctg00081, whole genome shotgun sequence
NZ_AEDA01000008
90.8 KB
87 CDS

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ctg00107, whole genome shotgun sequence
NZ_AEDA01000009
62.4 KB
61 CDS

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ctg00093, whole genome shotgun sequence
NZ_AEDA01000010
56.1 KB
59 CDS

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ctg00090, whole genome shotgun sequence
NZ_AEDA01000011
53.1 KB
57 CDS

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ctg00084, whole genome shotgun sequence
NZ_AEDA01000012
49.1 KB
35 CDS

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ctg00111, whole genome shotgun sequence
NZ_AEDA01000013
41.2 KB
43 CDS

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ctg00113, whole genome shotgun sequence
NZ_AEDA01000014
36.6 KB
48 CDS

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ctg00094, whole genome shotgun sequence
NZ_AEDA01000015
33.8 KB
41 CDS

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ctg00095, whole genome shotgun sequence
NZ_AEDA01000016
29.6 KB
30 CDS

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ctg00103, whole genome shotgun sequence
NZ_AEDA01000017
28.4 KB
28 CDS

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ctg00110, whole genome shotgun sequence
NZ_AEDA01000018
26.5 KB
22 CDS

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ctg00098, whole genome shotgun sequence
NZ_AEDA01000019
24.8 KB
30 CDS

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ctg00108, whole genome shotgun sequence
NZ_AEDA01000020
24.5 KB
27 CDS

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ctg00091, whole genome shotgun sequence
NZ_AEDA01000021
22.1 KB
18 CDS

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ctg00114, whole genome shotgun sequence
NZ_AEDA01000022
17.4 KB
22 CDS

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ctg00096, whole genome shotgun sequence
NZ_AEDA01000023
16.3 KB
20 CDS

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ctg00085, whole genome shotgun sequence
NZ_AEDA01000024
15.5 KB
17 CDS

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ctg00105, whole genome shotgun sequence
NZ_AEDA01000025
14.1 KB
18 CDS

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ctg00088, whole genome shotgun sequence
NZ_AEDA01000026
13.4 KB
14 CDS

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ctg00109, whole genome shotgun sequence
NZ_AEDA01000027
11.7 KB
10 CDS

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ctg00100, whole genome shotgun sequence
NZ_AEDA01000028
6.8 KB
10 CDS

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ctg00101, whole genome shotgun sequence
NZ_AEDA01000029
6.3 KB
5 CDS

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ctg00083, whole genome shotgun sequence
NZ_AEDA01000030
5.0 KB
8 CDS

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ctg00115, whole genome shotgun sequence
NZ_AEDA01000031
4.1 KB
7 CDS

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ctg00099, whole genome shotgun sequence
NZ_AEDA01000032
4.0 KB
4 CDS

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ctg00106, whole genome shotgun sequence
NZ_AEDA01000033
3.9 KB
4 CDS

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ctg00080, whole genome shotgun sequence
NZ_AEDA01000034
3.1 KB
6 CDS

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ctg00021, whole genome shotgun sequence
NZ_AEDA01000035
2.4 KB
1 CDS

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ctg00020, whole genome shotgun sequence
NZ_AEDA01000036
2.3 KB
2 CDS

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ctg00047, whole genome shotgun sequence
NZ_AEDA01000037
2.2 KB
2 CDS

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ctg00097, whole genome shotgun sequence
NZ_AEDA01000038
2.2 KB
1 CDS

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ctg00102, whole genome shotgun sequence
NZ_AEDA01000039
2.1 KB
1 CDS

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ctg00022, whole genome shotgun sequence
NZ_AEDA01000040
1.9 KB
1 CDS

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ctg00019, whole genome shotgun sequence
NZ_AEDA01000041
1.6 KB
4 CDS

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ctg00023, whole genome shotgun sequence
NZ_AEDA01000042
1.4 KB
3 CDS

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ctg00005, whole genome shotgun sequence
NZ_AEDA01000043
1.3 KB
1 CDS

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ctg00018, whole genome shotgun sequence
NZ_AEDA01000044
1.2 KB
1 CDS

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ctg00012, whole genome shotgun sequence
NZ_AEDA01000045
1.2 KB
1 CDS

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ctg00003, whole genome shotgun sequence
NZ_AEDA01000046
1.1 KB
2 CDS

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ctg00059, whole genome shotgun sequence
NZ_AEDA01000047
1.1 KB
1 CDS

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ctg00007, whole genome shotgun sequence
NZ_AEDA01000048
1.1 KB
2 CDS

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ctg00025, whole genome shotgun sequence
NZ_AEDA01000049
993 bytes
1 CDS

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ctg00077, whole genome shotgun sequence
NZ_AEDA01000050
989 bytes
1 CDS

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ctg00017, whole genome shotgun sequence
NZ_AEDA01000051
961 bytes
2 CDS

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ctg00058, whole genome shotgun sequence
NZ_AEDA01000052
877 bytes
1 CDS

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ctg00131, whole genome shotgun sequence
NZ_AEDA01000053
804 bytes
2 CDS

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ctg00038, whole genome shotgun sequence
NZ_AEDA01000054
769 bytes
1 CDS

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ctg00033, whole genome shotgun sequence
NZ_AEDA01000055
640 bytes
2 CDS

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ctg00015, whole genome shotgun sequence
NZ_AEDA01000056
540 bytes
1 CDS

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ctg00009, whole genome shotgun sequence
NZ_AEDA01000057
533 bytes
1 CDS

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Taxonomy

External Links

Methanothermococcus okinawensis IH1

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Sequences

PubMed Search for Methanothermococcus okinawensis IH1

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