Methylacidiphilum infernorum V4

University of Hawaii

Genome Size: 2.3 megabases, GC Content: 45.5%, Released Date: May 30, 2008 #17184

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_010794
2.2 MB
2472 CDS

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References

Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia
Hou,S., Makarova,K.S., Saw,J.H., Senin,P., Ly,B.V., Zhou,Z., Ren,Y., Wang,J., Galperin,M.Y., Omelchenko,M.V., Wolf,Y.I., Yutin,N., Koonin,E.V., Stott,M.B., Mountain,B.W., Crowe,M.A., Smirnova,A.V., Dunfield,P.F., Feng,L., Wang,L. and Alam,M. Biol. Direct 3, 26 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Methylacidiphilum infernorum V4

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Sequences

References

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