Methylobacter tundripaludum SV96

JGI

Genome Size: 5.0 megabases, Released Date: Sept. 27, 2010 #20460

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

ctg237, whole genome shotgun sequence
NZ_AEGW01000001
573.2 KB
541 CDS

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ctg236, whole genome shotgun sequence
NZ_AEGW01000002
521.1 KB
419 CDS

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ctg235, whole genome shotgun sequence
NZ_AEGW01000003
464.3 KB
408 CDS

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ctg234, whole genome shotgun sequence
NZ_AEGW01000004
375.1 KB
380 CDS

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ctg233, whole genome shotgun sequence
NZ_AEGW01000005
323.6 KB
309 CDS

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ctg231, whole genome shotgun sequence
NZ_AEGW01000006
199.5 KB
199 CDS

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ctg230, whole genome shotgun sequence
NZ_AEGW01000007
195.8 KB
203 CDS

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ctg232, whole genome shotgun sequence
NZ_AEGW01000008
182.3 KB
191 CDS

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ctg229, whole genome shotgun sequence
NZ_AEGW01000009
176.8 KB
137 CDS

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ctg228, whole genome shotgun sequence
NZ_AEGW01000010
175.7 KB
157 CDS

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ctg221, whole genome shotgun sequence
NZ_AEGW01000011
162.5 KB
152 CDS

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ctg227, whole genome shotgun sequence
NZ_AEGW01000012
158.8 KB
145 CDS

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ctg226, whole genome shotgun sequence
NZ_AEGW01000013
153.7 KB
145 CDS

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ctg225, whole genome shotgun sequence
NZ_AEGW01000014
148.6 KB
134 CDS

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ctg224, whole genome shotgun sequence
NZ_AEGW01000015
144.8 KB
153 CDS

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ctg223, whole genome shotgun sequence
NZ_AEGW01000016
144.4 KB
154 CDS

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ctg222, whole genome shotgun sequence
NZ_AEGW01000017
123.0 KB
113 CDS

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ctg220, whole genome shotgun sequence
NZ_AEGW01000018
76.9 KB
74 CDS

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ctg219, whole genome shotgun sequence
NZ_AEGW01000019
72.1 KB
68 CDS

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ctg218, whole genome shotgun sequence
NZ_AEGW01000020
62.4 KB
66 CDS

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ctg217, whole genome shotgun sequence
NZ_AEGW01000021
41.6 KB
33 CDS

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ctg206, whole genome shotgun sequence
NZ_AEGW01000022
39.8 KB
64 CDS

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ctg215, whole genome shotgun sequence
NZ_AEGW01000023
38.3 KB
39 CDS

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ctg213, whole genome shotgun sequence
NZ_AEGW01000024
36.1 KB
31 CDS

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ctg214, whole genome shotgun sequence
NZ_AEGW01000025
30.5 KB
24 CDS

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ctg211, whole genome shotgun sequence
NZ_AEGW01000026
28.9 KB
23 CDS

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ctg212, whole genome shotgun sequence
NZ_AEGW01000027
25.1 KB
33 CDS

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ctg210, whole genome shotgun sequence
NZ_AEGW01000028
20.6 KB
3 CDS

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ctg216, whole genome shotgun sequence
NZ_AEGW01000029
19.5 KB
14 CDS

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ctg209, whole genome shotgun sequence
NZ_AEGW01000030
14.8 KB
17 CDS

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ctg208, whole genome shotgun sequence
NZ_AEGW01000031
11.0 KB
12 CDS

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ctg205, whole genome shotgun sequence
NZ_AEGW01000032
9.4 KB
16 CDS

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ctg207, whole genome shotgun sequence
NZ_AEGW01000033
7.5 KB
11 CDS

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ctg203, whole genome shotgun sequence
NZ_AEGW01000034
6.2 KB
8 CDS

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ctg204, whole genome shotgun sequence
NZ_AEGW01000035
5.4 KB
3 CDS

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ctg202, whole genome shotgun sequence
NZ_AEGW01000036
5.2 KB
1 CDS

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ctg192, whole genome shotgun sequence
NZ_AEGW01000037
3.4 KB
5 CDS

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ctg201, whole genome shotgun sequence
NZ_AEGW01000038
3.1 KB
3 CDS

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ctg200, whole genome shotgun sequence
NZ_AEGW01000039
2.8 KB
2 CDS

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ctg191, whole genome shotgun sequence
NZ_AEGW01000040
2.4 KB
4 CDS

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ctg185, whole genome shotgun sequence
NZ_AEGW01000041
2.4 KB
4 CDS

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ctg181, whole genome shotgun sequence
NZ_AEGW01000042
2.4 KB
2 CDS

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ctg171, whole genome shotgun sequence
NZ_AEGW01000043
2.1 KB
3 CDS

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ctg199, whole genome shotgun sequence
NZ_AEGW01000044
2.1 KB
3 CDS

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ctg198, whole genome shotgun sequence
NZ_AEGW01000045
1.7 KB
1 CDS

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ctg195, whole genome shotgun sequence
NZ_AEGW01000046
1.7 KB
2 CDS

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ctg182, whole genome shotgun sequence
NZ_AEGW01000047
1.5 KB
1 CDS

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ctg176, whole genome shotgun sequence
NZ_AEGW01000048
1.5 KB
3 CDS

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ctg177, whole genome shotgun sequence
NZ_AEGW01000049
1.5 KB
3 CDS

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ctg154, whole genome shotgun sequence
NZ_AEGW01000050
1.5 KB
3 CDS

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ctg132, whole genome shotgun sequence
NZ_AEGW01000051
1.5 KB
2 CDS

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ctg172, whole genome shotgun sequence
NZ_AEGW01000052
1.5 KB
2 CDS

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ctg26, whole genome shotgun sequence
NZ_AEGW01000053
1.5 KB
3 CDS

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ctg136, whole genome shotgun sequence
NZ_AEGW01000054
1.5 KB
4 CDS

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ctg179, whole genome shotgun sequence
NZ_AEGW01000055
1.5 KB
1 CDS

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ctg72, whole genome shotgun sequence
NZ_AEGW01000056
1.5 KB
2 CDS

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ctg18, whole genome shotgun sequence
NZ_AEGW01000057
1.5 KB
2 CDS

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ctg37, whole genome shotgun sequence
NZ_AEGW01000058
1.5 KB
2 CDS

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ctg29, whole genome shotgun sequence
NZ_AEGW01000059
1.5 KB
3 CDS

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ctg25, whole genome shotgun sequence
NZ_AEGW01000060
1.5 KB
1 CDS

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ctg184, whole genome shotgun sequence
NZ_AEGW01000061
1.5 KB
2 CDS

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ctg188, whole genome shotgun sequence
NZ_AEGW01000062
1.5 KB
3 CDS

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ctg15, whole genome shotgun sequence
NZ_AEGW01000063
1.5 KB
3 CDS

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ctg3, whole genome shotgun sequence
NZ_AEGW01000064
1.5 KB
2 CDS

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ctg169, whole genome shotgun sequence
NZ_AEGW01000065
1.5 KB
2 CDS

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ctg24, whole genome shotgun sequence
NZ_AEGW01000066
1.5 KB
1 CDS

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ctg8, whole genome shotgun sequence
NZ_AEGW01000067
1.5 KB
4 CDS

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ctg23, whole genome shotgun sequence
NZ_AEGW01000068
1.5 KB
2 CDS

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ctg175, whole genome shotgun sequence
NZ_AEGW01000069
1.5 KB
2 CDS

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ctg13, whole genome shotgun sequence
NZ_AEGW01000070
1.5 KB
2 CDS

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ctg156, whole genome shotgun sequence
NZ_AEGW01000071
1.5 KB
2 CDS

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ctg187, whole genome shotgun sequence
NZ_AEGW01000072
1.5 KB
1 CDS

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ctg183, whole genome shotgun sequence
NZ_AEGW01000073
1.4 KB
3 CDS

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ctg190, whole genome shotgun sequence
NZ_AEGW01000074
1.3 KB
2 CDS

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ctg196, whole genome shotgun sequence
NZ_AEGW01000075
1.3 KB
1 CDS

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ctg21, whole genome shotgun sequence
NZ_AEGW01000076
1.3 KB
2 CDS

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ctg19, whole genome shotgun sequence
NZ_AEGW01000077
1.2 KB
2 CDS

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ctg194, whole genome shotgun sequence
NZ_AEGW01000078
1.2 KB
2 CDS

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ctg197, whole genome shotgun sequence
NZ_AEGW01000079
1.1 KB
1 CDS

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ctg163, whole genome shotgun sequence
NZ_AEGW01000080
1.1 KB
2 CDS

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ctg27, whole genome shotgun sequence
NZ_AEGW01000081
1.1 KB
3 CDS

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ctg178, whole genome shotgun sequence
NZ_AEGW01000082
1.0 KB
1 CDS

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ctg193, whole genome shotgun sequence
NZ_AEGW01000083
1021 bytes
2 CDS

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ctg120, whole genome shotgun sequence
NZ_AEGW01000084
849 bytes
1 CDS

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ctg81, whole genome shotgun sequence
NZ_AEGW01000085
746 bytes
2 CDS

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ctg189, whole genome shotgun sequence
NZ_AEGW01000086
725 bytes
1 CDS

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ctg186, whole genome shotgun sequence
NZ_AEGW01000087
711 bytes
1 CDS

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ctg31, whole genome shotgun sequence
NZ_AEGW01000088
658 bytes
2 CDS

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ctg14, whole genome shotgun sequence
NZ_AEGW01000089
650 bytes
2 CDS

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ctg128, whole genome shotgun sequence
NZ_AEGW01000090
648 bytes
1 CDS

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ctg153, whole genome shotgun sequence
NZ_AEGW01000091
635 bytes
0 CDS

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ctg119, whole genome shotgun sequence
NZ_AEGW01000092
634 bytes
2 CDS

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ctg7, whole genome shotgun sequence
NZ_AEGW01000093
625 bytes
1 CDS

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ctg160, whole genome shotgun sequence
NZ_AEGW01000094
594 bytes
0 CDS

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ctg12, whole genome shotgun sequence
NZ_AEGW01000095
579 bytes
1 CDS

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ctg165, whole genome shotgun sequence
NZ_AEGW01000096
555 bytes
1 CDS

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ctg139, whole genome shotgun sequence
NZ_AEGW01000097
538 bytes
0 CDS

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ctg167, whole genome shotgun sequence
NZ_AEGW01000098
526 bytes
1 CDS

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ctg63, whole genome shotgun sequence
NZ_AEGW01000099
518 bytes
1 CDS

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ctg125, whole genome shotgun sequence
NZ_AEGW01000100
518 bytes
0 CDS

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ctg146, whole genome shotgun sequence
NZ_AEGW01000101
508 bytes
2 CDS

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ctg48, whole genome shotgun sequence
NZ_AEGW01000102
508 bytes
1 CDS

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Taxonomy

External Links

Methylobacter tundripaludum SV96

Search Genome

Sequences

PubMed Search for Methylobacter tundripaludum SV96

Related Genomes