Methylosinus trichosporium OB3b

DOE Joint Genome Institute

Genome Size: 4.8 megabases, Released Date: May 18, 2010 #20461

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

ctg00066, whole genome shotgun sequence
NZ_ADVE01000001
231.0 KB
206 CDS

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ctg00006, whole genome shotgun sequence
NZ_ADVE01000002
166.5 KB
171 CDS

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ctg00022, whole genome shotgun sequence
NZ_ADVE01000003
154.2 KB
147 CDS

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ctg00086, whole genome shotgun sequence
NZ_ADVE01000004
138.1 KB
131 CDS

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ctg00087, whole genome shotgun sequence
NZ_ADVE01000005
130.6 KB
114 CDS

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ctg00053, whole genome shotgun sequence
NZ_ADVE01000006
129.1 KB
131 CDS

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ctg00034, whole genome shotgun sequence
NZ_ADVE01000007
105.2 KB
86 CDS

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ctg00097, whole genome shotgun sequence
NZ_ADVE01000008
103.8 KB
106 CDS

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ctg00071, whole genome shotgun sequence
NZ_ADVE01000009
93.4 KB
87 CDS

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ctg00065, whole genome shotgun sequence
NZ_ADVE01000010
88.7 KB
72 CDS

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ctg00028, whole genome shotgun sequence
NZ_ADVE01000011
86.3 KB
86 CDS

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ctg00103, whole genome shotgun sequence
NZ_ADVE01000012
85.2 KB
54 CDS

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ctg00023, whole genome shotgun sequence
NZ_ADVE01000013
84.4 KB
67 CDS

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ctg00039, whole genome shotgun sequence
NZ_ADVE01000014
75.5 KB
83 CDS

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ctg00040, whole genome shotgun sequence
NZ_ADVE01000015
75.0 KB
75 CDS

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ctg00030, whole genome shotgun sequence
NZ_ADVE01000016
74.8 KB
73 CDS

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ctg00011, whole genome shotgun sequence
NZ_ADVE01000017
72.3 KB
84 CDS

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ctg00043, whole genome shotgun sequence
NZ_ADVE01000018
71.7 KB
79 CDS

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ctg00016, whole genome shotgun sequence
NZ_ADVE01000019
70.5 KB
76 CDS

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ctg00050, whole genome shotgun sequence
NZ_ADVE01000020
70.3 KB
58 CDS

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ctg00051, whole genome shotgun sequence
NZ_ADVE01000021
68.1 KB
68 CDS

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ctg00070, whole genome shotgun sequence
NZ_ADVE01000022
66.6 KB
68 CDS

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ctg00074, whole genome shotgun sequence
NZ_ADVE01000023
66.3 KB
69 CDS

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ctg00081, whole genome shotgun sequence
NZ_ADVE01000024
63.7 KB
71 CDS

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ctg00015, whole genome shotgun sequence
NZ_ADVE01000025
60.1 KB
53 CDS

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ctg00082, whole genome shotgun sequence
NZ_ADVE01000026
59.6 KB
52 CDS

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ctg00029, whole genome shotgun sequence
NZ_ADVE01000027
59.0 KB
64 CDS

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ctg00089, whole genome shotgun sequence
NZ_ADVE01000028
58.4 KB
62 CDS

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ctg00114, whole genome shotgun sequence
NZ_ADVE01000029
56.6 KB
40 CDS

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ctg00032, whole genome shotgun sequence
NZ_ADVE01000030
56.2 KB
54 CDS

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ctg00056, whole genome shotgun sequence
NZ_ADVE01000031
55.0 KB
52 CDS

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ctg00013, whole genome shotgun sequence
NZ_ADVE01000032
54.4 KB
70 CDS

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ctg00105, whole genome shotgun sequence
NZ_ADVE01000033
53.5 KB
26 CDS

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ctg00035, whole genome shotgun sequence
NZ_ADVE01000034
51.3 KB
48 CDS

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ctg00024, whole genome shotgun sequence
NZ_ADVE01000035
50.8 KB
54 CDS

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ctg00057, whole genome shotgun sequence
NZ_ADVE01000036
50.5 KB
50 CDS

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ctg00068, whole genome shotgun sequence
NZ_ADVE01000037
45.5 KB
45 CDS

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ctg00027, whole genome shotgun sequence
NZ_ADVE01000038
43.7 KB
50 CDS

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ctg00038, whole genome shotgun sequence
NZ_ADVE01000039
42.3 KB
34 CDS

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ctg00088, whole genome shotgun sequence
NZ_ADVE01000040
39.9 KB
40 CDS

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ctg00058, whole genome shotgun sequence
NZ_ADVE01000041
39.0 KB
41 CDS

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ctg00020, whole genome shotgun sequence
NZ_ADVE01000042
36.6 KB
39 CDS

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ctg00100, whole genome shotgun sequence
NZ_ADVE01000043
35.3 KB
30 CDS

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ctg00098, whole genome shotgun sequence
NZ_ADVE01000044
34.6 KB
47 CDS

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ctg00084, whole genome shotgun sequence
NZ_ADVE01000045
34.2 KB
24 CDS

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ctg00077, whole genome shotgun sequence
NZ_ADVE01000046
33.5 KB
24 CDS

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ctg00009, whole genome shotgun sequence
NZ_ADVE01000047
32.5 KB
33 CDS

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ctg00062, whole genome shotgun sequence
NZ_ADVE01000048
32.4 KB
30 CDS

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ctg00112, whole genome shotgun sequence
NZ_ADVE01000049
31.7 KB
25 CDS

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ctg00113, whole genome shotgun sequence
NZ_ADVE01000050
31.5 KB
25 CDS

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ctg00069, whole genome shotgun sequence
NZ_ADVE01000051
31.3 KB
28 CDS

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ctg00003, whole genome shotgun sequence
NZ_ADVE01000052
31.3 KB
28 CDS

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ctg00042, whole genome shotgun sequence
NZ_ADVE01000053
31.3 KB
30 CDS

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ctg00091, whole genome shotgun sequence
NZ_ADVE01000054
30.5 KB
27 CDS

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ctg00101, whole genome shotgun sequence
NZ_ADVE01000055
29.3 KB
30 CDS

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ctg00083, whole genome shotgun sequence
NZ_ADVE01000056
28.1 KB
23 CDS

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ctg00018, whole genome shotgun sequence
NZ_ADVE01000057
27.3 KB
24 CDS

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ctg00106, whole genome shotgun sequence
NZ_ADVE01000058
26.5 KB
6 CDS

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ctg00093, whole genome shotgun sequence
NZ_ADVE01000059
25.7 KB
30 CDS

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ctg00059, whole genome shotgun sequence
NZ_ADVE01000060
25.6 KB
25 CDS

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ctg00092, whole genome shotgun sequence
NZ_ADVE01000061
25.5 KB
29 CDS

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ctg00061, whole genome shotgun sequence
NZ_ADVE01000062
24.9 KB
23 CDS

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ctg00067, whole genome shotgun sequence
NZ_ADVE01000063
24.3 KB
18 CDS

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ctg00049, whole genome shotgun sequence
NZ_ADVE01000064
24.2 KB
23 CDS

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ctg00045, whole genome shotgun sequence
NZ_ADVE01000065
24.1 KB
24 CDS

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ctg00007, whole genome shotgun sequence
NZ_ADVE01000066
23.8 KB
16 CDS

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ctg00017, whole genome shotgun sequence
NZ_ADVE01000067
22.6 KB
24 CDS

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ctg00046, whole genome shotgun sequence
NZ_ADVE01000068
22.5 KB
24 CDS

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ctg00021, whole genome shotgun sequence
NZ_ADVE01000069
22.1 KB
21 CDS

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ctg00096, whole genome shotgun sequence
NZ_ADVE01000070
21.6 KB
21 CDS

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ctg00108, whole genome shotgun sequence
NZ_ADVE01000071
20.5 KB
23 CDS

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ctg00095, whole genome shotgun sequence
NZ_ADVE01000072
18.5 KB
17 CDS

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ctg00014, whole genome shotgun sequence
NZ_ADVE01000073
18.2 KB
18 CDS

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ctg00048, whole genome shotgun sequence
NZ_ADVE01000074
18.2 KB
18 CDS

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ctg00118, whole genome shotgun sequence
NZ_ADVE01000075
17.2 KB
11 CDS

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ctg00125, whole genome shotgun sequence
NZ_ADVE01000076
17.1 KB
13 CDS

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ctg00047, whole genome shotgun sequence
NZ_ADVE01000077
16.8 KB
13 CDS

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ctg00090, whole genome shotgun sequence
NZ_ADVE01000078
16.8 KB
16 CDS

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ctg00041, whole genome shotgun sequence
NZ_ADVE01000079
16.4 KB
14 CDS

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ctg00075, whole genome shotgun sequence
NZ_ADVE01000080
16.4 KB
17 CDS

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ctg00031, whole genome shotgun sequence
NZ_ADVE01000081
16.3 KB
18 CDS

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ctg00055, whole genome shotgun sequence
NZ_ADVE01000082
15.5 KB
15 CDS

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ctg00073, whole genome shotgun sequence
NZ_ADVE01000083
15.2 KB
19 CDS

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ctg00005, whole genome shotgun sequence
NZ_ADVE01000084
14.5 KB
15 CDS

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ctg00124, whole genome shotgun sequence
NZ_ADVE01000085
14.4 KB
12 CDS

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ctg00072, whole genome shotgun sequence
NZ_ADVE01000086
14.0 KB
10 CDS

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ctg00129, whole genome shotgun sequence
NZ_ADVE01000087
13.7 KB
7 CDS

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ctg00064, whole genome shotgun sequence
NZ_ADVE01000088
13.6 KB
11 CDS

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ctg00115, whole genome shotgun sequence
NZ_ADVE01000089
13.4 KB
8 CDS

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ctg00085, whole genome shotgun sequence
NZ_ADVE01000090
13.0 KB
11 CDS

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ctg00131, whole genome shotgun sequence
NZ_ADVE01000091
12.9 KB
13 CDS

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ctg00008, whole genome shotgun sequence
NZ_ADVE01000092
12.3 KB
11 CDS

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ctg00026, whole genome shotgun sequence
NZ_ADVE01000093
11.9 KB
13 CDS

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ctg00025, whole genome shotgun sequence
NZ_ADVE01000094
10.3 KB
7 CDS

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ctg00130, whole genome shotgun sequence
NZ_ADVE01000095
10.2 KB
14 CDS

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ctg00004, whole genome shotgun sequence
NZ_ADVE01000096
10.2 KB
7 CDS

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ctg00044, whole genome shotgun sequence
NZ_ADVE01000097
10.1 KB
13 CDS

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ctg00079, whole genome shotgun sequence
NZ_ADVE01000098
10.0 KB
11 CDS

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ctg00120, whole genome shotgun sequence
NZ_ADVE01000099
9.8 KB
9 CDS

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ctg00116, whole genome shotgun sequence
NZ_ADVE01000100
9.5 KB
10 CDS

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ctg00123, whole genome shotgun sequence
NZ_ADVE01000101
8.5 KB
5 CDS

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ctg00033, whole genome shotgun sequence
NZ_ADVE01000102
8.3 KB
10 CDS

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ctg00121, whole genome shotgun sequence
NZ_ADVE01000103
8.2 KB
8 CDS

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ctg00109, whole genome shotgun sequence
NZ_ADVE01000104
8.1 KB
10 CDS

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ctg00122, whole genome shotgun sequence
NZ_ADVE01000105
8.1 KB
8 CDS

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ctg00102, whole genome shotgun sequence
NZ_ADVE01000106
7.9 KB
8 CDS

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ctg00110, whole genome shotgun sequence
NZ_ADVE01000107
7.8 KB
9 CDS

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ctg00037, whole genome shotgun sequence
NZ_ADVE01000108
7.4 KB
4 CDS

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ctg00019, whole genome shotgun sequence
NZ_ADVE01000109
7.2 KB
7 CDS

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ctg00080, whole genome shotgun sequence
NZ_ADVE01000110
7.2 KB
7 CDS

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ctg00052, whole genome shotgun sequence
NZ_ADVE01000111
7.2 KB
7 CDS

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ctg00094, whole genome shotgun sequence
NZ_ADVE01000112
7.1 KB
7 CDS

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ctg00054, whole genome shotgun sequence
NZ_ADVE01000113
6.8 KB
7 CDS

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ctg00012, whole genome shotgun sequence
NZ_ADVE01000114
6.7 KB
12 CDS

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ctg00036, whole genome shotgun sequence
NZ_ADVE01000115
6.5 KB
7 CDS

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ctg00119, whole genome shotgun sequence
NZ_ADVE01000116
6.1 KB
1 CDS

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ctg00111, whole genome shotgun sequence
NZ_ADVE01000117
5.5 KB
4 CDS

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ctg00159, whole genome shotgun sequence
NZ_ADVE01000118
5.3 KB
0 CDS

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ctg00010, whole genome shotgun sequence
NZ_ADVE01000119
5.1 KB
5 CDS

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ctg00107, whole genome shotgun sequence
NZ_ADVE01000120
5.1 KB
2 CDS

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ctg00063, whole genome shotgun sequence
NZ_ADVE01000121
4.6 KB
4 CDS

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ctg00127, whole genome shotgun sequence
NZ_ADVE01000122
4.5 KB
2 CDS

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ctg00099, whole genome shotgun sequence
NZ_ADVE01000123
4.4 KB
5 CDS

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ctg00117, whole genome shotgun sequence
NZ_ADVE01000124
4.2 KB
4 CDS

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ctg00076, whole genome shotgun sequence
NZ_ADVE01000125
4.2 KB
5 CDS

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ctg00060, whole genome shotgun sequence
NZ_ADVE01000126
3.8 KB
3 CDS

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ctg00163, whole genome shotgun sequence
NZ_ADVE01000127
3.5 KB
3 CDS

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ctg00128, whole genome shotgun sequence
NZ_ADVE01000128
3.5 KB
2 CDS

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ctg00002, whole genome shotgun sequence
NZ_ADVE01000129
3.3 KB
3 CDS

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ctg00153, whole genome shotgun sequence
NZ_ADVE01000130
2.8 KB
2 CDS

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ctg00126, whole genome shotgun sequence
NZ_ADVE01000131
2.6 KB
1 CDS

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ctg00141, whole genome shotgun sequence
NZ_ADVE01000132
2.6 KB
4 CDS

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ctg00142, whole genome shotgun sequence
NZ_ADVE01000133
2.5 KB
1 CDS

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ctg00151, whole genome shotgun sequence
NZ_ADVE01000134
2.2 KB
3 CDS

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ctg00147, whole genome shotgun sequence
NZ_ADVE01000135
2.2 KB
2 CDS

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ctg00178, whole genome shotgun sequence
NZ_ADVE01000136
2.2 KB
1 CDS

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ctg00137, whole genome shotgun sequence
NZ_ADVE01000137
2.1 KB
3 CDS

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ctg00202, whole genome shotgun sequence
NZ_ADVE01000138
1.9 KB
2 CDS

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ctg00150, whole genome shotgun sequence
NZ_ADVE01000139
1.8 KB
2 CDS

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ctg00173, whole genome shotgun sequence
NZ_ADVE01000140
1.8 KB
4 CDS

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ctg00135, whole genome shotgun sequence
NZ_ADVE01000141
1.6 KB
2 CDS

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ctg00175, whole genome shotgun sequence
NZ_ADVE01000142
1.6 KB
2 CDS

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ctg00180, whole genome shotgun sequence
NZ_ADVE01000143
1.6 KB
1 CDS

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ctg00138, whole genome shotgun sequence
NZ_ADVE01000144
1.5 KB
1 CDS

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ctg00198, whole genome shotgun sequence
NZ_ADVE01000145
1.4 KB
3 CDS

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ctg00176, whole genome shotgun sequence
NZ_ADVE01000146
1.4 KB
2 CDS

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ctg00177, whole genome shotgun sequence
NZ_ADVE01000147
1.4 KB
2 CDS

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ctg00139, whole genome shotgun sequence
NZ_ADVE01000148
1.4 KB
2 CDS

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ctg00190, whole genome shotgun sequence
NZ_ADVE01000149
1.3 KB
1 CDS

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ctg00201, whole genome shotgun sequence
NZ_ADVE01000150
1.2 KB
2 CDS

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ctg00170, whole genome shotgun sequence
NZ_ADVE01000151
1.1 KB
1 CDS

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ctg00104, whole genome shotgun sequence
NZ_ADVE01000152
1.1 KB
2 CDS

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ctg00199, whole genome shotgun sequence
NZ_ADVE01000153
1.1 KB
1 CDS

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ctg00220, whole genome shotgun sequence
NZ_ADVE01000154
1.0 KB
1 CDS

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ctg00231, whole genome shotgun sequence
NZ_ADVE01000155
1.0 KB
2 CDS

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ctg00188, whole genome shotgun sequence
NZ_ADVE01000156
1020 bytes
1 CDS

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ctg00133, whole genome shotgun sequence
NZ_ADVE01000157
996 bytes
1 CDS

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ctg00136, whole genome shotgun sequence
NZ_ADVE01000158
978 bytes
1 CDS

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ctg00134, whole genome shotgun sequence
NZ_ADVE01000159
953 bytes
1 CDS

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ctg00146, whole genome shotgun sequence
NZ_ADVE01000160
929 bytes
1 CDS

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ctg00148, whole genome shotgun sequence
NZ_ADVE01000161
806 bytes
1 CDS

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ctg00216, whole genome shotgun sequence
NZ_ADVE01000162
802 bytes
1 CDS

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ctg00200, whole genome shotgun sequence
NZ_ADVE01000163
771 bytes
1 CDS

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ctg00179, whole genome shotgun sequence
NZ_ADVE01000164
770 bytes
2 CDS

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ctg00174, whole genome shotgun sequence
NZ_ADVE01000165
731 bytes
1 CDS

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ctg00078, whole genome shotgun sequence
NZ_ADVE01000166
730 bytes
1 CDS

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ctg00207, whole genome shotgun sequence
NZ_ADVE01000167
721 bytes
1 CDS

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ctg00155, whole genome shotgun sequence
NZ_ADVE01000168
649 bytes
1 CDS

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ctg00143, whole genome shotgun sequence
NZ_ADVE01000169
627 bytes
1 CDS

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ctg00189, whole genome shotgun sequence
NZ_ADVE01000170
555 bytes
1 CDS

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ctg00171, whole genome shotgun sequence
NZ_ADVE01000171
547 bytes
1 CDS

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ctg00196, whole genome shotgun sequence
NZ_ADVE01000172
540 bytes
2 CDS

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ctg00152, whole genome shotgun sequence
NZ_ADVE01000173
523 bytes
1 CDS

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References

Genome Sequence of the Obligate Methanotroph Methylosinus trichosporium Strain OB3b
Stein,L.Y., Yoon,S., Semrau,J.D., Dispirito,A.A., Crombie,A., Murrell,J.C., Vuilleumier,S., Kalyuzhnaya,M.G., Op den Camp,H.J., Bringel,F., Bruce,D., Cheng,J.F., Copeland,A., Goodwin,L., Han,S., Hauser,L., Jetten,M.S., Lajus,A., Land,M.L., Lapidus,A., Lucas,S., Medigue,C., Pitluck,S., Woyke,T., Zeytun,A. and Klotz,M.G. J. Bacteriol. 192 (24), 6497-6498 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Methylosinus trichosporium OB3b

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Sequences

References

Related Genomes