Moraxella catarrhalis RH4

Radboud University Nijmegen Medical Centre

Genome Size: 1.9 megabases, Released Date: May 11, 2010 #19967

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
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Allow mismatched bases

Sequences

complete genome
CP002005
1.8 MB
1886 CDS

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References

Genome analysis of Moraxella catarrhalis strain RH4, a human respiratory tract pathogen
de Vries,S.P., van Hijum,S.A., Schueler,W., Riesbeck,K., Hays,J.P., Hermans,P.W. and Bootsma,H.J. J. Bacteriol. 192 (14), 3574-3583 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Moraxella catarrhalis RH4

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Sequences

References

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