Mycobacterium abscessus ATCC 19977

Genoscope

Genome Size: 5.12 megabases, GC Content: 64.1%, Released Date: March 1, 2008 #17202

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
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Allow mismatched bases

Sequences

chromosome 1
NC_010397
4.8 MB
4920 CDS

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unnamed plasmid
NC_010394
22.8 KB
21 CDS

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References

Non mycobacterial virulence genes in the genome of the emerging pathogen Mycobacterium abscessus ATCC 19977
Ripoll,F., Pasek,S., Schenowitz,C., Dossat,C., Barbe,V., Rottman,M., Macheras,E., Heym,B., Herrmann,J.L., Daffe,M., Brosch,R., Risler,J.L. and Gaillard,J.L. PLoS ONE 4 (6), E5660 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Mycobacterium abscessus ATCC 19977

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Sequences

References

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