Mycobacterium bovis BCG str. Pasteur 1173P2

Mycobacterium bovis sequencing teams , Unire de Genetique Moleculaire Bacterienne Institut Pasteur , Research Group, Veterinary Laboratories Agency Weybridge , TB Research Group, Veterinary Laboratories Agency

Genome Size: 4.4 megabases, GC Content: 65.6%, Released Date: Jan. 8, 2007 #17206

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_008769
4.2 MB
3949 CDS

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References

Genome plasticity of BCG and impact on vaccine efficacy
Brosch,R., Gordon,S.V., Garnier,T., Eiglmeier,K., Frigui,W., Valenti,P., Dos Santos,S., Duthoy,S., Lacroix,C., Garcia-Pelayo,C., Inwald,J.K., Golby,P., Garcia,J.N., Hewinson,R.G., Behr,M.A., Quail,M.A., Churcher,C., Barrell,B.G., Parkhill,J. and Cole,S.T. Proc. Natl. Acad. Sci. U.S.A. 104 (13), 5596-5601 (2007)
PubMed, PubGet, HubMed

Taxonomy

External Links

Mycobacterium bovis BCG str. Pasteur 1173P2

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Sequences

References

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