Mycobacterium leprae Br4923

Institut Pasteur , Institut Pasteur PF1

Genome Size: 3.3 megabases, GC Content: 57.8%, Released Date: Jan. 11, 2009 #17209

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_011896
3.1 MB
1604 CDS

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References

Comparative genomic and phylogeographic analysis of Mycobacterium leprae
Monot,M., Honore,N., Garnier,T., Zidane,N., Sherafi,D., Paniz-Mondolfi,A., Matsuoka,M., Taylor,G.M., Donoghue,H.D., Bouwman,A., Mays,S., Watson,C., Lockwood,D., Khamispour,A., Dowlati,Y., Jianping,S., Rea,T.H., Vera-Cabrera,L., Stefani,M.M., Banu,S., Macdonald,M., Sapkota,B.R., Spencer,J.S., Thomas,J., Harshman,K., Singh,P., Busso,P., Gattiker,A., Rougemont,J., Brennan,P.J. and Cole,S.T. Nat. Genet. 41 (12), 1282-1289 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Mycobacterium leprae Br4923

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Sequences

References

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