Mycobacterium marinum M

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Genome Size: 6.62 megabases, GC Content: 65.7%, Released Date: April 15, 2008 #17211

Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_010612
6.3 MB
5423 CDS

Table view
Circular View
Artemis Viewer

plasmid pMM23
NC_010604
22.8 KB
29 CDS

Table view
Circular View
Artemis Viewer

References

Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis
Stinear,T.P., Seemann,T., Harrison,P.F., Jenkin,G.A., Davies,J.K., Johnson,P.D., Abdellah,Z., Arrowsmith,C., Chillingworth,T., Churcher,C., Clarke,K., Cronin,A., Davis,P., Goodhead,I., Holroyd,N., Jagels,K., Lord,A., Moule,S., Mungall,K., Norbertczak,H., Quail,M.A., Rabbinowitsch,E., Walker,D., White,B., Whitehead,S., Small,P.L., Brosch,R., Ramakrishnan,L., Fischbach,M.A., Parkhill,J. and Cole,S.T. Genome Res. (2008) In press
PubMed, PubGet, HubMed

Taxonomy

External Links

Mycobacterium marinum M

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Sequences

References

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