Mycobacterium tuberculosis H37Ra

Chinese National Human Genome Center at Shanghai , Fudan University, P.R. China, Shanghai , Johns Hopkins University, Department of Molecular Microbiology & Immunology, Bloomberg School of Public Health, USA, Baltimore

Genome Size: 4.4 megabases, GC Content: 65.6%, Released Date: May 31, 2007 #17218

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_009525
4.2 MB
4034 CDS

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References

Genetic basis of virulence attenuation revealed by comparative genomic analysis of Mycobacterium tuberculosis strain H37Ra versus H37Rv
Zheng,H., Lu,L., Wang,B., Pu,S., Zhang,X., Zhu,G., Shi,W., Zhang,L., Wang,H., Wang,S., Zhao,G. and Zhang,Y. PLoS ONE 3 (6), E2375 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Mycobacterium tuberculosis H37Ra

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Sequences

References

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