Mycobacterium tuberculosis HN878

Texas A&M University

Genome Size: 4.4 megabases, #20473

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig1, whole genome shotgun sequence
ADNF01000001
87.6 KB
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contig2, whole genome shotgun sequence
ADNF01000002
12.5 KB
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contig3, whole genome shotgun sequence
ADNF01000003
26.6 KB
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contig4, whole genome shotgun sequence
ADNF01000004
17.4 KB
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contig5, whole genome shotgun sequence
ADNF01000005
108.4 KB
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contig6, whole genome shotgun sequence
ADNF01000006
70.0 KB
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contig7, whole genome shotgun sequence
ADNF01000007
660 bytes
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contig8, whole genome shotgun sequence
ADNF01000008
345 bytes
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contig9, whole genome shotgun sequence
ADNF01000009
1.8 KB
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contig10, whole genome shotgun sequence
ADNF01000010
10.1 KB
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contig11, whole genome shotgun sequence
ADNF01000011
10.4 KB
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contig12, whole genome shotgun sequence
ADNF01000012
101.1 KB
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contig13, whole genome shotgun sequence
ADNF01000013
152.7 KB
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contig14, whole genome shotgun sequence
ADNF01000014
352 bytes
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contig15, whole genome shotgun sequence
ADNF01000015
46.7 KB
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contig16, whole genome shotgun sequence
ADNF01000016
32.1 KB
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contig17, whole genome shotgun sequence
ADNF01000017
37.8 KB
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contig18, whole genome shotgun sequence
ADNF01000018
806 bytes
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contig19, whole genome shotgun sequence
ADNF01000019
83.7 KB
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contig20, whole genome shotgun sequence
ADNF01000020
2.5 KB
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contig21, whole genome shotgun sequence
ADNF01000021
907 bytes
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contig22, whole genome shotgun sequence
ADNF01000022
399 bytes
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contig23, whole genome shotgun sequence
ADNF01000023
82.8 KB
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contig24, whole genome shotgun sequence
ADNF01000024
604 bytes
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contig25, whole genome shotgun sequence
ADNF01000025
33.9 KB
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contig26, whole genome shotgun sequence
ADNF01000026
3.7 KB
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contig27, whole genome shotgun sequence
ADNF01000027
119.0 KB
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contig28, whole genome shotgun sequence
ADNF01000028
1.7 KB
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contig29, whole genome shotgun sequence
ADNF01000029
1.8 KB
0 CDS

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contig30, whole genome shotgun sequence
ADNF01000030
24.6 KB
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contig31, whole genome shotgun sequence
ADNF01000031
599 bytes
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contig32, whole genome shotgun sequence
ADNF01000032
65.2 KB
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contig33, whole genome shotgun sequence
ADNF01000033
1.1 KB
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contig34, whole genome shotgun sequence
ADNF01000034
17.0 KB
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contig35, whole genome shotgun sequence
ADNF01000035
436 bytes
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contig36, whole genome shotgun sequence
ADNF01000036
2.5 KB
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contig37, whole genome shotgun sequence
ADNF01000037
3.1 KB
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contig38, whole genome shotgun sequence
ADNF01000038
64.5 KB
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contig39, whole genome shotgun sequence
ADNF01000039
96.4 KB
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contig40, whole genome shotgun sequence
ADNF01000040
102.1 KB
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contig41, whole genome shotgun sequence
ADNF01000041
71.7 KB
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contig42, whole genome shotgun sequence
ADNF01000042
9.0 KB
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contig43, whole genome shotgun sequence
ADNF01000043
43.9 KB
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contig44, whole genome shotgun sequence
ADNF01000044
11.6 KB
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contig45, whole genome shotgun sequence
ADNF01000045
221 bytes
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contig46, whole genome shotgun sequence
ADNF01000046
386 bytes
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contig47, whole genome shotgun sequence
ADNF01000047
1.6 KB
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contig48, whole genome shotgun sequence
ADNF01000048
8.6 KB
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contig49, whole genome shotgun sequence
ADNF01000049
8.9 KB
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contig50, whole genome shotgun sequence
ADNF01000050
235 bytes
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contig51, whole genome shotgun sequence
ADNF01000051
195.3 KB
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contig52, whole genome shotgun sequence
ADNF01000052
434 bytes
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contig53, whole genome shotgun sequence
ADNF01000053
122.7 KB
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contig54, whole genome shotgun sequence
ADNF01000054
585 bytes
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contig55, whole genome shotgun sequence
ADNF01000055
59.1 KB
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contig56, whole genome shotgun sequence
ADNF01000056
25.3 KB
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contig57, whole genome shotgun sequence
ADNF01000057
331 bytes
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contig58, whole genome shotgun sequence
ADNF01000058
273.2 KB
0 CDS

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contig59, whole genome shotgun sequence
ADNF01000059
30.6 KB
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contig60, whole genome shotgun sequence
ADNF01000060
30.3 KB
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contig61, whole genome shotgun sequence
ADNF01000061
4.5 KB
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contig62, whole genome shotgun sequence
ADNF01000062
55.7 KB
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contig63, whole genome shotgun sequence
ADNF01000063
203.9 KB
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contig64, whole genome shotgun sequence
ADNF01000064
98.9 KB
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contig65, whole genome shotgun sequence
ADNF01000065
4.5 KB
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contig66, whole genome shotgun sequence
ADNF01000066
246 bytes
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contig67, whole genome shotgun sequence
ADNF01000067
230 bytes
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contig68, whole genome shotgun sequence
ADNF01000068
200 bytes
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contig69, whole genome shotgun sequence
ADNF01000069
387 bytes
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contig70, whole genome shotgun sequence
ADNF01000070
39.0 KB
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contig71, whole genome shotgun sequence
ADNF01000071
18.6 KB
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contig72, whole genome shotgun sequence
ADNF01000072
55.2 KB
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contig73, whole genome shotgun sequence
ADNF01000073
20.9 KB
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contig74, whole genome shotgun sequence
ADNF01000074
15.5 KB
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contig75, whole genome shotgun sequence
ADNF01000075
14.7 KB
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contig76, whole genome shotgun sequence
ADNF01000076
15.7 KB
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contig77, whole genome shotgun sequence
ADNF01000077
59.8 KB
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contig78, whole genome shotgun sequence
ADNF01000078
83.3 KB
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contig79, whole genome shotgun sequence
ADNF01000079
15.8 KB
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contig80, whole genome shotgun sequence
ADNF01000080
569.2 KB
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contig81, whole genome shotgun sequence
ADNF01000081
10.4 KB
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contig82, whole genome shotgun sequence
ADNF01000082
26.0 KB
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contig83, whole genome shotgun sequence
ADNF01000083
21.7 KB
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contig84, whole genome shotgun sequence
ADNF01000084
50.6 KB
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contig85, whole genome shotgun sequence
ADNF01000085
71.6 KB
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contig86, whole genome shotgun sequence
ADNF01000086
630 bytes
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contig87, whole genome shotgun sequence
ADNF01000087
793 bytes
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contig88, whole genome shotgun sequence
ADNF01000088
2.9 KB
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contig89, whole genome shotgun sequence
ADNF01000089
1.3 KB
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contig90, whole genome shotgun sequence
ADNF01000090
79.5 KB
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contig91, whole genome shotgun sequence
ADNF01000091
513 bytes
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contig92, whole genome shotgun sequence
ADNF01000092
4.1 KB
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contig93, whole genome shotgun sequence
ADNF01000093
55.3 KB
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contig94, whole genome shotgun sequence
ADNF01000094
7.3 KB
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contig95, whole genome shotgun sequence
ADNF01000095
250.5 KB
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contig96, whole genome shotgun sequence
ADNF01000096
51.6 KB
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References

The non-clonality of drug resistance in Beijing-genotype isolates of Mycobacterium tuberculosis from the Western Cape of South Africa
Ioerger,T.R., Feng,Y., Chen,X., Dobos,K.M., Victor,T.C., Streicher,E.M., Warren,R.M., Gey van Pittius,N.C., Van Helden,P.D. and Sacchettini,J.C. BMC Genomics 11 (1), 670 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Mycobacterium tuberculosis HN878

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Sequences

References

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