Mycobacterium tuberculosis R1207

Texas A&M University

Genome Size: 4.4 megabases, #20477

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig1, whole genome shotgun sequence
ADNH01000001
87.6 KB
0 CDS

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contig2, whole genome shotgun sequence
ADNH01000002
12.6 KB
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contig3, whole genome shotgun sequence
ADNH01000003
44.1 KB
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contig4, whole genome shotgun sequence
ADNH01000004
178.6 KB
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contig5, whole genome shotgun sequence
ADNH01000005
809 bytes
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contig6, whole genome shotgun sequence
ADNH01000006
255 bytes
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contig7, whole genome shotgun sequence
ADNH01000007
22.7 KB
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contig8, whole genome shotgun sequence
ADNH01000008
220 bytes
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contig9, whole genome shotgun sequence
ADNH01000009
253.8 KB
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contig10, whole genome shotgun sequence
ADNH01000010
830 bytes
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contig11, whole genome shotgun sequence
ADNH01000011
46.6 KB
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contig12, whole genome shotgun sequence
ADNH01000012
209 bytes
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contig13, whole genome shotgun sequence
ADNH01000013
206 bytes
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contig14, whole genome shotgun sequence
ADNH01000014
276 bytes
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contig15, whole genome shotgun sequence
ADNH01000015
210 bytes
0 CDS

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contig16, whole genome shotgun sequence
ADNH01000016
70.1 KB
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contig17, whole genome shotgun sequence
ADNH01000017
87.4 KB
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contig18, whole genome shotgun sequence
ADNH01000018
260 bytes
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contig19, whole genome shotgun sequence
ADNH01000019
331 bytes
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contig20, whole genome shotgun sequence
ADNH01000020
1.1 KB
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contig21, whole genome shotgun sequence
ADNH01000021
419 bytes
0 CDS

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contig22, whole genome shotgun sequence
ADNH01000022
81.6 KB
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contig23, whole genome shotgun sequence
ADNH01000023
670 bytes
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contig24, whole genome shotgun sequence
ADNH01000024
439 bytes
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contig25, whole genome shotgun sequence
ADNH01000025
38.2 KB
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contig26, whole genome shotgun sequence
ADNH01000026
120.4 KB
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contig27, whole genome shotgun sequence
ADNH01000027
216 bytes
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contig28, whole genome shotgun sequence
ADNH01000028
3.5 KB
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contig29, whole genome shotgun sequence
ADNH01000029
90.6 KB
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contig30, whole genome shotgun sequence
ADNH01000030
1.1 KB
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contig31, whole genome shotgun sequence
ADNH01000031
17.4 KB
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contig32, whole genome shotgun sequence
ADNH01000032
2.6 KB
0 CDS

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contig33, whole genome shotgun sequence
ADNH01000033
3.2 KB
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contig34, whole genome shotgun sequence
ADNH01000034
162.6 KB
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contig35, whole genome shotgun sequence
ADNH01000035
102.2 KB
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contig36, whole genome shotgun sequence
ADNH01000036
80.9 KB
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contig37, whole genome shotgun sequence
ADNH01000037
461 bytes
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contig38, whole genome shotgun sequence
ADNH01000038
43.9 KB
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contig39, whole genome shotgun sequence
ADNH01000039
11.6 KB
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contig40, whole genome shotgun sequence
ADNH01000040
443 bytes
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contig41, whole genome shotgun sequence
ADNH01000041
338 bytes
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contig42, whole genome shotgun sequence
ADNH01000042
550 bytes
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contig43, whole genome shotgun sequence
ADNH01000043
428 bytes
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contig44, whole genome shotgun sequence
ADNH01000044
2.1 KB
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contig45, whole genome shotgun sequence
ADNH01000045
18.0 KB
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contig46, whole genome shotgun sequence
ADNH01000046
318.8 KB
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contig47, whole genome shotgun sequence
ADNH01000047
58.5 KB
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contig48, whole genome shotgun sequence
ADNH01000048
26.1 KB
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contig49, whole genome shotgun sequence
ADNH01000049
38.4 KB
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contig50, whole genome shotgun sequence
ADNH01000050
232.7 KB
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contig51, whole genome shotgun sequence
ADNH01000051
28.1 KB
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contig52, whole genome shotgun sequence
ADNH01000052
35.1 KB
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contig53, whole genome shotgun sequence
ADNH01000053
202 bytes
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contig54, whole genome shotgun sequence
ADNH01000054
263.8 KB
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contig55, whole genome shotgun sequence
ADNH01000055
99.1 KB
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contig56, whole genome shotgun sequence
ADNH01000056
5.3 KB
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contig57, whole genome shotgun sequence
ADNH01000057
252 bytes
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contig58, whole genome shotgun sequence
ADNH01000058
1.1 KB
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contig59, whole genome shotgun sequence
ADNH01000059
437 bytes
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contig60, whole genome shotgun sequence
ADNH01000060
57.6 KB
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contig61, whole genome shotgun sequence
ADNH01000061
55.4 KB
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contig62, whole genome shotgun sequence
ADNH01000062
458 bytes
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contig63, whole genome shotgun sequence
ADNH01000063
36.5 KB
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contig64, whole genome shotgun sequence
ADNH01000064
90.4 KB
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contig65, whole genome shotgun sequence
ADNH01000065
209 bytes
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contig66, whole genome shotgun sequence
ADNH01000066
83.3 KB
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contig67, whole genome shotgun sequence
ADNH01000067
15.8 KB
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contig68, whole genome shotgun sequence
ADNH01000068
563.0 KB
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contig69, whole genome shotgun sequence
ADNH01000069
208 bytes
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contig70, whole genome shotgun sequence
ADNH01000070
345 bytes
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contig71, whole genome shotgun sequence
ADNH01000071
1.3 KB
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contig72, whole genome shotgun sequence
ADNH01000072
36.5 KB
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contig73, whole genome shotgun sequence
ADNH01000073
21.8 KB
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contig74, whole genome shotgun sequence
ADNH01000074
121.9 KB
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contig75, whole genome shotgun sequence
ADNH01000075
822 bytes
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contig76, whole genome shotgun sequence
ADNH01000076
802 bytes
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contig77, whole genome shotgun sequence
ADNH01000077
414 bytes
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contig78, whole genome shotgun sequence
ADNH01000078
229 bytes
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contig79, whole genome shotgun sequence
ADNH01000079
3.4 KB
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contig80, whole genome shotgun sequence
ADNH01000080
318 bytes
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contig81, whole genome shotgun sequence
ADNH01000081
686 bytes
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contig82, whole genome shotgun sequence
ADNH01000082
200 bytes
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contig83, whole genome shotgun sequence
ADNH01000083
1.3 KB
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contig84, whole genome shotgun sequence
ADNH01000084
515 bytes
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contig85, whole genome shotgun sequence
ADNH01000085
325 bytes
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contig86, whole genome shotgun sequence
ADNH01000086
79.7 KB
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contig87, whole genome shotgun sequence
ADNH01000087
607 bytes
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contig88, whole genome shotgun sequence
ADNH01000088
4.2 KB
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contig89, whole genome shotgun sequence
ADNH01000089
468 bytes
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contig90, whole genome shotgun sequence
ADNH01000090
55.3 KB
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contig91, whole genome shotgun sequence
ADNH01000091
309.7 KB
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References

The non-clonality of drug resistance in Beijing-genotype isolates of Mycobacterium tuberculosis from the Western Cape of South Africa
Ioerger,T.R., Feng,Y., Chen,X., Dobos,K.M., Victor,T.C., Streicher,E.M., Warren,R.M., Gey van Pittius,N.C., Van Helden,P.D. and Sacchettini,J.C. BMC Genomics 11 (1), 670 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Mycobacterium tuberculosis R1207

Search Genome

Sequences

References

Related Genomes