Mycobacterium tuberculosis X122

Texas A&M University

Genome Size: 4.4 megabases, #20490

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig1, whole genome shotgun sequence
ADNG01000001
87.6 KB
0 CDS

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contig2, whole genome shotgun sequence
ADNG01000002
12.6 KB
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contig3, whole genome shotgun sequence
ADNG01000003
26.6 KB
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contig4, whole genome shotgun sequence
ADNG01000004
17.6 KB
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contig5, whole genome shotgun sequence
ADNG01000005
178.7 KB
0 CDS

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contig6, whole genome shotgun sequence
ADNG01000006
1.1 KB
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contig7, whole genome shotgun sequence
ADNG01000007
282 bytes
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contig8, whole genome shotgun sequence
ADNG01000008
1.8 KB
0 CDS

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contig9, whole genome shotgun sequence
ADNG01000009
20.7 KB
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contig10, whole genome shotgun sequence
ADNG01000010
253.8 KB
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contig11, whole genome shotgun sequence
ADNG01000011
689 bytes
0 CDS

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contig12, whole genome shotgun sequence
ADNG01000012
36.4 KB
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contig13, whole genome shotgun sequence
ADNG01000013
10.5 KB
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contig14, whole genome shotgun sequence
ADNG01000014
392 bytes
0 CDS

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contig15, whole genome shotgun sequence
ADNG01000015
224 bytes
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contig16, whole genome shotgun sequence
ADNG01000016
418 bytes
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contig17, whole genome shotgun sequence
ADNG01000017
157.7 KB
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contig18, whole genome shotgun sequence
ADNG01000018
706 bytes
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contig19, whole genome shotgun sequence
ADNG01000019
919 bytes
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contig20, whole genome shotgun sequence
ADNG01000020
418 bytes
0 CDS

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contig21, whole genome shotgun sequence
ADNG01000021
82.9 KB
0 CDS

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contig22, whole genome shotgun sequence
ADNG01000022
313 bytes
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contig23, whole genome shotgun sequence
ADNG01000023
698 bytes
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contig24, whole genome shotgun sequence
ADNG01000024
550 bytes
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contig25, whole genome shotgun sequence
ADNG01000025
38.2 KB
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contig26, whole genome shotgun sequence
ADNG01000026
120.4 KB
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contig27, whole genome shotgun sequence
ADNG01000027
297 bytes
0 CDS

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contig28, whole genome shotgun sequence
ADNG01000028
3.5 KB
0 CDS

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contig29, whole genome shotgun sequence
ADNG01000029
90.7 KB
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contig30, whole genome shotgun sequence
ADNG01000030
1.1 KB
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contig31, whole genome shotgun sequence
ADNG01000031
17.5 KB
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contig32, whole genome shotgun sequence
ADNG01000032
2.6 KB
0 CDS

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contig33, whole genome shotgun sequence
ADNG01000033
3.2 KB
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contig34, whole genome shotgun sequence
ADNG01000034
308 bytes
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contig35, whole genome shotgun sequence
ADNG01000035
217 bytes
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contig36, whole genome shotgun sequence
ADNG01000036
160.8 KB
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contig37, whole genome shotgun sequence
ADNG01000037
102.2 KB
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contig38, whole genome shotgun sequence
ADNG01000038
80.8 KB
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contig39, whole genome shotgun sequence
ADNG01000039
438 bytes
0 CDS

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contig40, whole genome shotgun sequence
ADNG01000040
43.9 KB
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contig41, whole genome shotgun sequence
ADNG01000041
12.0 KB
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contig42, whole genome shotgun sequence
ADNG01000042
325 bytes
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contig43, whole genome shotgun sequence
ADNG01000043
450 bytes
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contig44, whole genome shotgun sequence
ADNG01000044
393 bytes
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contig45, whole genome shotgun sequence
ADNG01000045
2.0 KB
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contig46, whole genome shotgun sequence
ADNG01000046
17.5 KB
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contig47, whole genome shotgun sequence
ADNG01000047
351 bytes
0 CDS

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contig48, whole genome shotgun sequence
ADNG01000048
377.5 KB
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contig49, whole genome shotgun sequence
ADNG01000049
222 bytes
0 CDS

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contig50, whole genome shotgun sequence
ADNG01000050
26.0 KB
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contig51, whole genome shotgun sequence
ADNG01000051
272.0 KB
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contig52, whole genome shotgun sequence
ADNG01000052
30.8 KB
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contig53, whole genome shotgun sequence
ADNG01000053
35.1 KB
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contig54, whole genome shotgun sequence
ADNG01000054
259.8 KB
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contig55, whole genome shotgun sequence
ADNG01000055
104.5 KB
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contig56, whole genome shotgun sequence
ADNG01000056
402 bytes
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contig57, whole genome shotgun sequence
ADNG01000057
201 bytes
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contig58, whole genome shotgun sequence
ADNG01000058
1.1 KB
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contig59, whole genome shotgun sequence
ADNG01000059
434 bytes
0 CDS

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contig60, whole genome shotgun sequence
ADNG01000060
113.1 KB
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contig61, whole genome shotgun sequence
ADNG01000061
475 bytes
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contig62, whole genome shotgun sequence
ADNG01000062
36.4 KB
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contig63, whole genome shotgun sequence
ADNG01000063
90.4 KB
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contig64, whole genome shotgun sequence
ADNG01000064
83.3 KB
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contig65, whole genome shotgun sequence
ADNG01000065
15.8 KB
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contig66, whole genome shotgun sequence
ADNG01000066
261 bytes
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contig67, whole genome shotgun sequence
ADNG01000067
569.5 KB
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contig68, whole genome shotgun sequence
ADNG01000068
1.8 KB
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contig69, whole genome shotgun sequence
ADNG01000069
37.8 KB
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contig70, whole genome shotgun sequence
ADNG01000070
21.7 KB
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contig71, whole genome shotgun sequence
ADNG01000071
123.0 KB
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contig72, whole genome shotgun sequence
ADNG01000072
303 bytes
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contig73, whole genome shotgun sequence
ADNG01000073
921 bytes
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contig74, whole genome shotgun sequence
ADNG01000074
827 bytes
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contig75, whole genome shotgun sequence
ADNG01000075
3.4 KB
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contig76, whole genome shotgun sequence
ADNG01000076
238 bytes
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contig77, whole genome shotgun sequence
ADNG01000077
202 bytes
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contig78, whole genome shotgun sequence
ADNG01000078
1.3 KB
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contig79, whole genome shotgun sequence
ADNG01000079
79.7 KB
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contig80, whole genome shotgun sequence
ADNG01000080
590 bytes
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contig81, whole genome shotgun sequence
ADNG01000081
4.2 KB
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contig82, whole genome shotgun sequence
ADNG01000082
343 bytes
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contig83, whole genome shotgun sequence
ADNG01000083
55.3 KB
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contig84, whole genome shotgun sequence
ADNG01000084
258.0 KB
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contig85, whole genome shotgun sequence
ADNG01000085
51.6 KB
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References

The non-clonality of drug resistance in Beijing-genotype isolates of Mycobacterium tuberculosis from the Western Cape of South Africa
Ioerger,T.R., Feng,Y., Chen,X., Dobos,K.M., Victor,T.C., Streicher,E.M., Warren,R.M., Gey van Pittius,N.C., Van Helden,P.D. and Sacchettini,J.C. BMC Genomics 11 (1), 670 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Mycobacterium tuberculosis X122

Search Genome

Sequences

References

Related Genomes