Mycobacterium ulcerans Agy99

Institut Pasteur

Genome Size: 5.8 megabases, GC Content: 65.4%, Released Date: Dec. 1, 2006 #17221

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_008611
5.4 MB
4160 CDS

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Mycobacterium ulcerans AGY99 plasmid pMUM001
NC_005916
170.1 KB
81 CDS

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References

Reductive evolution and niche adaptation inferred from the genome of Mycobacterium ulcerans, the causative agent of Buruli ulcer
Stinear,T.P., Seemann,T., Pidot,S., Frigui,W., Reysset,G., Garnier,T., Meurice,G., Simon,D., Bouchier,C., Ma,L., Tichit,M., Porter,J.L., Ryan,J., Johnson,P.D., Davies,J.K., Jenkin,G.A., Small,P.L., Jones,L.M., Tekaia,F., Laval,F., Daffe,M., Parkhill,J. and Cole,S.T. Genome Res. 17 (2), 192-200 (2007)
PubMed, PubGet, HubMed

Taxonomy

External Links

Mycobacterium ulcerans Agy99

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Sequences

References

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