Mycoplasma hyopneumoniae 7448

LNCC - Laboratorio Nacional de Computacao Cientifica

Genome Size: 0.92 megabases, GC Content: 28.5%, Released Date: Aug. 8, 2005 #17231

 Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region:   bp. upstream of a gene 
Leave blank for no restriction.

Report matches:  in any location within intergenic regions only overlapping genes only  

Allow  1 2 3 4 5 6 7 8 9  mismatched bases 

Sequences

References

• Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae
  Vasconcelos,A.T., Ferreira,H.B., Bizarro,C.V., Bonatto,S.L., Carvalho,M.O., Pinto,P.M., Almeida,D.F., Almeida,L.G., Almeida,R., Alves-Filho,L., Assuncao,E.N., Azevedo,V.A., Bogo,M.R., Brigido,M.M., Brocchi,M., Burity,H.A., Camargo,A.A., Camargo,S.S., Carepo,M.S., Carraro,D.M., de Mattos Cascardo,J.C., Castro,L.A., Cavalcanti,G., Chemale,G., Collevatti,R.G., Cunha,C.W., Dallagiovanna,B., Dambros,B.P., Dellagostin,O.A., Falcao,C., Fantinatti-Garboggini,F., Felipe,M.S., Fiorentin,L., Franco,G.R., Freitas,N.S., Frias,D., Grangeiro,T.B., Grisard,E.C., Guimaraes,C.T., Hungria,M., Jardim,S.N., Krieger,M.A., Laurino,J.P., Lima,L.F., Lopes,M.I., Loreto,E.L., Madeira,H.M., Manfio,G.P., Maranhao,A.Q., Martinkovics,C.T., Medeiros,S.R., Moreira,M.A., Neiva,M., Ramalho-Neto,C.E., Nicolas,M.F., Oliveira,S.C., Paixao,R.F., Pedrosa,F.O., Pena,S.D., Pereira,M., Pereira-Ferrari,L., Piffer,I., Pinto,L.S., Potrich,D.P., Salim,A.C., Santos,F.R., Schmitt,R., Schneider,M.P., Schrank,A., Schrank,I.S., Schuck,A.F., Seuanez,H.N., Silva,D.W., Silva,R., Silva,S.C., Soares,C.M., Souza,K.R., Souza,R.C., Staats,C.C., Steffens,M.B., Teixeira,S.M., Urmenyi,T.P., Vainstein,M.H., Zuccherato,L.W., Simpson,A.J. and Zaha,A. J. Bacteriol. 187 (16), 5568-5577 (2005)
  PubMed, PubGet, HubMed

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