Mycoplasma pneumoniae M129

Heidelberg Univ., Germany

Genome Size: 0.82 megabases, GC Content: 40.0%, Released Date: Nov. 15, 1996 #17236

 Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region:   bp. upstream of a gene 
Leave blank for no restriction.

Report matches:  in any location within intergenic regions only overlapping genes only  

Allow  1 2 3 4 5 6 7 8 9  mismatched bases 

Sequences

References

• Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames
  Dandekar,T., Huynen,M., Regula,J.T., Ueberle,B., Zimmermann,C.U., Andrade,M.A., Doerks,T., Sanchez-Pulido,L., Snel,B., Suyama,M., Yuan,Y.P., Herrmann,R. and Bork,P. Nucleic Acids Res. 28 (17), 3278-3288 (2000)
  PubMed, PubGet, HubMed
• Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae
  Himmelreich,R., Hilbert,H., Plagens,H., Pirkl,E., Li,B.C. and Herrmann,R. Nucleic Acids Res. 24 (22), 4420-4449 (1996)
  PubMed, PubGet, HubMed

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