Natronomonas pharaonis DSM 2160

Max Planck Institute

Genome Size: 2.75 megabases, GC Content: 63.1%, Released Date: Sept. 28, 2005 #17243

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_007426
2.5 MB
2659 CDS

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plasmid PL131
NC_007427
127.9 KB
125 CDS

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plasmid PL23
NC_007428
22.9 KB
36 CDS

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References

Living with two extremes: conclusions from the genome sequence of Natronomonas pharaonis
Falb,M., Pfeiffer,F., Palm,P., Rodewald,K., Hickmann,V., Tittor,J. and Oesterhelt,D. Genome Res. 15 (10), 1336-1343 (2005)
PubMed, PubGet, HubMed

Taxonomy

External Links

Natronomonas pharaonis DSM 2160

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Sequences

References

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