Neisseria gonorrhoeae FA19

Broad Institute

GC Content: 52.5%, Released Date: Dec. 15, 2008 #18257

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABZJ01000001
605 bytes
3 CDS

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whole genome shotgun sequence
NZ_ABZJ01000002
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ABZJ01000003
563 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABZJ01000004
7.1 KB
5 CDS

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whole genome shotgun sequence
NZ_ABZJ01000005
8.4 KB
9 CDS

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whole genome shotgun sequence
NZ_ABZJ01000006
2.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ABZJ01000007
34.1 KB
33 CDS

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whole genome shotgun sequence
NZ_ABZJ01000008
10.9 KB
9 CDS

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whole genome shotgun sequence
NZ_ABZJ01000009
22.5 KB
19 CDS

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whole genome shotgun sequence
NZ_ABZJ01000010
519 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABZJ01000011
1.6 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZJ01000012
10.9 KB
14 CDS

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whole genome shotgun sequence
NZ_ABZJ01000013
6.9 KB
9 CDS

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whole genome shotgun sequence
NZ_ABZJ01000014
4.6 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZJ01000015
2.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ABZJ01000016
2.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABZJ01000017
40.8 KB
40 CDS

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whole genome shotgun sequence
NZ_ABZJ01000018
29.1 KB
35 CDS

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whole genome shotgun sequence
NZ_ABZJ01000019
36.7 KB
45 CDS

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whole genome shotgun sequence
NZ_ABZJ01000020
5.8 KB
5 CDS

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whole genome shotgun sequence
NZ_ABZJ01000021
1.8 KB
2 CDS

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whole genome shotgun sequence
NZ_ABZJ01000022
3.3 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZJ01000023
5.9 KB
5 CDS

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whole genome shotgun sequence
NZ_ABZJ01000024
3.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ABZJ01000025
2.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ABZJ01000026
11.8 KB
12 CDS

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whole genome shotgun sequence
NZ_ABZJ01000027
4.7 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZJ01000028
2.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABZJ01000029
20.9 KB
21 CDS

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whole genome shotgun sequence
NZ_ABZJ01000030
29.5 KB
27 CDS

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whole genome shotgun sequence
NZ_ABZJ01000031
24.4 KB
26 CDS

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whole genome shotgun sequence
NZ_ABZJ01000032
6.0 KB
7 CDS

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whole genome shotgun sequence
NZ_ABZJ01000033
2.6 KB
1 CDS

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whole genome shotgun sequence
NZ_ABZJ01000034
3.9 KB
7 CDS

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whole genome shotgun sequence
NZ_ABZJ01000035
3.1 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZJ01000036
12.6 KB
14 CDS

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whole genome shotgun sequence
NZ_ABZJ01000037
15.8 KB
15 CDS

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whole genome shotgun sequence
NZ_ABZJ01000038
2.6 KB
3 CDS

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whole genome shotgun sequence
NZ_ABZJ01000039
18.9 KB
22 CDS

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whole genome shotgun sequence
NZ_ABZJ01000040
18.3 KB
21 CDS

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whole genome shotgun sequence
NZ_ABZJ01000041
5.1 KB
9 CDS

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whole genome shotgun sequence
NZ_ABZJ01000042
9.8 KB
9 CDS

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whole genome shotgun sequence
NZ_ABZJ01000043
55.8 KB
62 CDS

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whole genome shotgun sequence
NZ_ABZJ01000044
73.9 KB
84 CDS

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whole genome shotgun sequence
NZ_ABZJ01000045
6.8 KB
7 CDS

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whole genome shotgun sequence
NZ_ABZJ01000046
24.4 KB
25 CDS

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whole genome shotgun sequence
NZ_ABZJ01000047
20.6 KB
24 CDS

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whole genome shotgun sequence
NZ_ABZJ01000048
10.6 KB
14 CDS

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whole genome shotgun sequence
NZ_ABZJ01000049
5.7 KB
11 CDS

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whole genome shotgun sequence
NZ_ABZJ01000050
21.7 KB
27 CDS

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whole genome shotgun sequence
NZ_ABZJ01000051
7.4 KB
6 CDS

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whole genome shotgun sequence
NZ_ABZJ01000052
8.8 KB
8 CDS

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whole genome shotgun sequence
NZ_ABZJ01000053
25.5 KB
23 CDS

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whole genome shotgun sequence
NZ_ABZJ01000054
19.3 KB
17 CDS

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whole genome shotgun sequence
NZ_ABZJ01000055
20.0 KB
20 CDS

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whole genome shotgun sequence
NZ_ABZJ01000056
20.3 KB
21 CDS

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whole genome shotgun sequence
NZ_ABZJ01000057
17.7 KB
17 CDS

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whole genome shotgun sequence
NZ_ABZJ01000058
19.6 KB
23 CDS

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whole genome shotgun sequence
NZ_ABZJ01000059
22.5 KB
24 CDS

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whole genome shotgun sequence
NZ_ABZJ01000060
36.1 KB
38 CDS

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whole genome shotgun sequence
NZ_ABZJ01000061
11.0 KB
10 CDS

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whole genome shotgun sequence
NZ_ABZJ01000062
18.3 KB
20 CDS

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whole genome shotgun sequence
NZ_ABZJ01000063
16.2 KB
18 CDS

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whole genome shotgun sequence
NZ_ABZJ01000064
19.9 KB
20 CDS

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whole genome shotgun sequence
NZ_ABZJ01000065
49.2 KB
56 CDS

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whole genome shotgun sequence
NZ_ABZJ01000066
7.0 KB
10 CDS

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whole genome shotgun sequence
NZ_ABZJ01000067
26.1 KB
26 CDS

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whole genome shotgun sequence
NZ_ABZJ01000068
37.7 KB
39 CDS

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whole genome shotgun sequence
NZ_ABZJ01000069
26.7 KB
29 CDS

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whole genome shotgun sequence
NZ_ABZJ01000070
22.3 KB
26 CDS

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whole genome shotgun sequence
NZ_ABZJ01000071
23.0 KB
24 CDS

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whole genome shotgun sequence
NZ_ABZJ01000072
10.4 KB
13 CDS

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whole genome shotgun sequence
NZ_ABZJ01000073
4.3 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZJ01000074
48.1 KB
56 CDS

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whole genome shotgun sequence
NZ_ABZJ01000075
22.0 KB
29 CDS

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whole genome shotgun sequence
NZ_ABZJ01000076
24.4 KB
23 CDS

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whole genome shotgun sequence
NZ_ABZJ01000077
1.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ABZJ01000078
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABZJ01000079
3.5 KB
5 CDS

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whole genome shotgun sequence
NZ_ABZJ01000080
18.3 KB
15 CDS

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whole genome shotgun sequence
NZ_ABZJ01000081
8.2 KB
10 CDS

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whole genome shotgun sequence
NZ_ABZJ01000082
3.7 KB
5 CDS

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whole genome shotgun sequence
NZ_ABZJ01000083
5.3 KB
10 CDS

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whole genome shotgun sequence
NZ_ABZJ01000084
17.0 KB
20 CDS

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whole genome shotgun sequence
NZ_ABZJ01000085
6.3 KB
10 CDS

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whole genome shotgun sequence
NZ_ABZJ01000086
14.3 KB
15 CDS

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whole genome shotgun sequence
NZ_ABZJ01000087
3.0 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZJ01000088
7.7 KB
9 CDS

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whole genome shotgun sequence
NZ_ABZJ01000089
20.1 KB
17 CDS

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whole genome shotgun sequence
NZ_ABZJ01000090
19.2 KB
17 CDS

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whole genome shotgun sequence
NZ_ABZJ01000091
7.7 KB
8 CDS

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whole genome shotgun sequence
NZ_ABZJ01000092
14.1 KB
16 CDS

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whole genome shotgun sequence
NZ_ABZJ01000093
5.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABZJ01000094
30.0 KB
30 CDS

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whole genome shotgun sequence
NZ_ABZJ01000095
5.5 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZJ01000096
40.8 KB
40 CDS

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whole genome shotgun sequence
NZ_ABZJ01000097
18.1 KB
19 CDS

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whole genome shotgun sequence
NZ_ABZJ01000098
35.7 KB
41 CDS

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whole genome shotgun sequence
NZ_ABZJ01000099
33.2 KB
36 CDS

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whole genome shotgun sequence
NZ_ABZJ01000100
9.1 KB
10 CDS

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whole genome shotgun sequence
NZ_ABZJ01000101
10.8 KB
12 CDS

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whole genome shotgun sequence
NZ_ABZJ01000102
2.3 KB
6 CDS

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whole genome shotgun sequence
NZ_ABZJ01000103
847 bytes
3 CDS

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whole genome shotgun sequence
NZ_ABZJ01000104
903 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABZJ01000105
865 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABZJ01000106
825 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABZJ01000107
722 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABZJ01000108
1.7 KB
1 CDS

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whole genome shotgun sequence
NZ_ABZJ01000109
845 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABZJ01000110
888 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABZJ01000111
1.3 KB
3 CDS

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whole genome shotgun sequence
NZ_ABZJ01000112
502 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABZJ01000113
1019 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABZJ01000114
957 bytes
4 CDS

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whole genome shotgun sequence
NZ_ABZJ01000115
1013 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABZJ01000116
2.2 KB
5 CDS

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whole genome shotgun sequence
NZ_ABZJ01000117
2.6 KB
3 CDS

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whole genome shotgun sequence
NZ_ABZJ01000118
1.6 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZJ01000119
7.1 KB
5 CDS

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whole genome shotgun sequence
NZ_ABZJ01000120
15.8 KB
15 CDS

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whole genome shotgun sequence
NZ_ABZJ01000121
7.1 KB
8 CDS

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whole genome shotgun sequence
NZ_ABZJ01000122
569 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABZJ01000123
5.5 KB
1 CDS

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whole genome shotgun sequence
NZ_ABZJ01000124
1.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ABZJ01000125
680 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABZJ01000126
525 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABZJ01000127
621 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABZJ01000128
546 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABZJ01000129
2.9 KB
5 CDS

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whole genome shotgun sequence
NZ_ABZJ01000130
1.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ABZJ01000131
4.4 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZJ01000132
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ABZJ01000133
11.4 KB
15 CDS

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whole genome shotgun sequence
NZ_ABZJ01000134
4.3 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZJ01000135
3.5 KB
5 CDS

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whole genome shotgun sequence
NZ_ABZJ01000136
15.8 KB
20 CDS

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whole genome shotgun sequence
NZ_ABZJ01000137
23.9 KB
34 CDS

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whole genome shotgun sequence
NZ_ABZJ01000138
3.5 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZJ01000139
51.1 KB
49 CDS

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whole genome shotgun sequence
NZ_ABZJ01000140
2.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ABZJ01000141
26.5 KB
24 CDS

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whole genome shotgun sequence
NZ_ABZJ01000142
9.5 KB
10 CDS

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whole genome shotgun sequence
NZ_ABZJ01000143
10.1 KB
7 CDS

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whole genome shotgun sequence
NZ_ABZJ01000144
26.0 KB
23 CDS

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whole genome shotgun sequence
NZ_ABZJ01000145
17.5 KB
34 CDS

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whole genome shotgun sequence
NZ_ABZJ01000146
17.9 KB
16 CDS

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whole genome shotgun sequence
NZ_ABZJ01000147
1.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ABZJ01000148
16.8 KB
16 CDS

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whole genome shotgun sequence
NZ_ABZJ01000149
5.5 KB
7 CDS

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whole genome shotgun sequence
NZ_ABZJ01000150
15.7 KB
15 CDS

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whole genome shotgun sequence
NZ_ABZJ01000151
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABZJ01000152
530 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABZJ01000153
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABZJ01000154
19.1 KB
18 CDS

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whole genome shotgun sequence
NZ_ABZJ01000155
860 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABZJ01000156
34.8 KB
36 CDS

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whole genome shotgun sequence
NZ_ABZJ01000157
26.8 KB
35 CDS

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whole genome shotgun sequence
NZ_ABZJ01000158
2.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZJ01000159
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABZJ01000160
1.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ABZJ01000161
35.5 KB
33 CDS

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whole genome shotgun sequence
NZ_ABZJ01000162
13.7 KB
16 CDS

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whole genome shotgun sequence
NZ_ABZJ01000163
2.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ABZJ01000164
7.3 KB
7 CDS

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whole genome shotgun sequence
NZ_ABZJ01000165
593 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABZJ01000166
1.0 KB
1 CDS

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whole genome shotgun sequence
NZ_ABZJ01000167
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABZJ01000168
4.1 KB
9 CDS

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Taxonomy

External Links

Neisseria gonorrhoeae FA19

Search Genome

Sequences

PubMed Search for Neisseria gonorrhoeae FA19

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