Neisseria lactamica Y92-1009

Health Protection Agency, Porton Down

Genome Size: 2.0 megabases, #20496

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence, contig 1
CACL01000001
219.8 KB
238 CDS

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whole genome shotgun sequence, contig 2
CACL01000002
131.4 KB
126 CDS

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whole genome shotgun sequence, contig 3
CACL01000003
111.2 KB
86 CDS

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whole genome shotgun sequence, contig 4
CACL01000004
100.0 KB
95 CDS

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whole genome shotgun sequence, contig 5
CACL01000005
97.7 KB
99 CDS

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whole genome shotgun sequence, contig 6
CACL01000006
97.1 KB
101 CDS

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whole genome shotgun sequence, contig 7
CACL01000007
94.9 KB
104 CDS

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whole genome shotgun sequence, contig 8
CACL01000008
89.3 KB
79 CDS

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whole genome shotgun sequence, contig 9
CACL01000009
83.7 KB
94 CDS

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whole genome shotgun sequence, contig 10
CACL01000010
78.5 KB
76 CDS

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whole genome shotgun sequence, contig 11
CACL01000011
72.2 KB
74 CDS

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whole genome shotgun sequence, contig 12
CACL01000012
67.3 KB
59 CDS

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whole genome shotgun sequence, contig 13
CACL01000013
63.2 KB
58 CDS

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whole genome shotgun sequence, contig 14
CACL01000014
59.8 KB
62 CDS

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whole genome shotgun sequence, contig 15
CACL01000015
56.9 KB
61 CDS

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whole genome shotgun sequence, contig 16
CACL01000016
54.1 KB
59 CDS

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whole genome shotgun sequence, contig 17
CACL01000017
53.6 KB
47 CDS

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whole genome shotgun sequence, contig 18
CACL01000018
51.6 KB
46 CDS

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whole genome shotgun sequence, contig 19
CACL01000019
39.3 KB
34 CDS

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whole genome shotgun sequence, contig 20
CACL01000020
36.6 KB
37 CDS

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whole genome shotgun sequence, contig 21
CACL01000021
35.7 KB
32 CDS

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whole genome shotgun sequence, contig 22
CACL01000022
31.8 KB
25 CDS

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whole genome shotgun sequence, contig 23
CACL01000023
30.5 KB
22 CDS

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whole genome shotgun sequence, contig 24
CACL01000024
23.7 KB
22 CDS

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whole genome shotgun sequence, contig 25
CACL01000025
23.3 KB
28 CDS

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whole genome shotgun sequence, contig 26
CACL01000026
21.5 KB
20 CDS

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whole genome shotgun sequence, contig 27
CACL01000027
16.5 KB
21 CDS

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whole genome shotgun sequence, contig 28
CACL01000028
16.2 KB
21 CDS

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whole genome shotgun sequence, contig 29
CACL01000029
14.4 KB
9 CDS

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whole genome shotgun sequence, contig 30
CACL01000030
14.0 KB
13 CDS

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whole genome shotgun sequence, contig 31
CACL01000031
13.4 KB
15 CDS

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whole genome shotgun sequence, contig 32
CACL01000032
11.3 KB
14 CDS

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whole genome shotgun sequence, contig 33
CACL01000033
9.2 KB
13 CDS

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whole genome shotgun sequence, contig 34
CACL01000034
8.8 KB
6 CDS

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whole genome shotgun sequence, contig 35
CACL01000035
7.8 KB
9 CDS

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whole genome shotgun sequence, contig 36
CACL01000036
6.7 KB
8 CDS

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whole genome shotgun sequence, contig 37
CACL01000037
6.7 KB
8 CDS

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whole genome shotgun sequence, contig 38
CACL01000038
6.6 KB
4 CDS

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whole genome shotgun sequence, contig 39
CACL01000039
6.4 KB
7 CDS

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whole genome shotgun sequence, contig 40
CACL01000040
3.8 KB
4 CDS

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whole genome shotgun sequence, contig 41
CACL01000041
3.2 KB
5 CDS

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whole genome shotgun sequence, contig 42
CACL01000042
2.4 KB
3 CDS

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whole genome shotgun sequence, contig 43
CACL01000043
2.2 KB
1 CDS

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whole genome shotgun sequence, contig 44
CACL01000044
2.0 KB
3 CDS

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Taxonomy

External Links

Neisseria lactamica Y92-1009

Search Genome

Sequences

PubMed Search for Neisseria lactamica Y92-1009

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