Neisseria meningitidis 053442

Microbial Genome Center of ChMPH

Genome Size: 2.2 megabases, GC Content: 51.7%, Released Date: Dec. 3, 2007 #17247

Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_010120
2.1 MB
2020 CDS

Table view
Circular View
Artemis Viewer

References

Characterization of ST-4821 complex, a unique Neisseria meningitidis clone
Peng,J., Yang,L., Yang,F., Yang,J., Yan,Y., Nie,H., Zhang,X., Xiong,Z., Jiang,Y., Cheng,F., Xu,X., Chen,S., Sun,L., Li,W., Shen,Y., Shao,Z., Liang,X., Xu,J. and Jin,Q. Genomics 91 (1), 78-87 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Neisseria meningitidis 053442

Search Genome

Sequences

References

Related Genomes