Neisseria meningitidis alpha14

Bielefeld Univ

Genome Size: 2.1 megabases, Released Date: July 23, 2009 #17251

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_013016
2.0 MB
1872 CDS

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References

Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis
Schoen,C., Blom,J., Claus,H., Schramm-Gluck,A., Brandt,P., Muller,T., Goesmann,A., Joseph,B., Konietzny,S., Kurzai,O., Schmitt,C., Friedrich,T., Linke,B., Vogel,U. and Frosch,M. Proc. Natl. Acad. Sci. U.S.A. 105 (9), 3473-3478 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Neisseria meningitidis alpha14

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Sequences

References

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