Neisseria meningitidis alpha710

Institute for Hygiene and Microbiology, Wuerzburg University, Germany , Center for Biotechnology, Bielefeld University, Germany

Genome Size: 2.2 megabases, Released Date: Oct. 13, 2010 #19980

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
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Allow mismatched bases

Sequences

complete genome
CP001561
2.1 MB
2063 CDS

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References

Comparative genome biology of a serogroup B carriage and disease strain supports a polygenic nature of meningococcal virulence
Joseph,B., Schneiker-Bekel,S., Schramm-Gluck,A., Blom,J., Claus,H., Linke,B., Schwarz,R.F., Becker,A., Goesmann,A., Frosch,M. and Schoen,C. J. Bacteriol. 192 (20), 5363-5377 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Neisseria meningitidis alpha710

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Sequences

References

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