Nitrococcus mobilis Nb-231

J. Craig Venter Institute

Genome Size: 5.0 megabases, GC Content: 60.0%, Released Date: Feb. 24, 2006 #18272

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAOF01000001
690.0 KB
684 CDS

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whole genome shotgun sequence
NZ_AAOF01000002
404.4 KB
405 CDS

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whole genome shotgun sequence
NZ_AAOF01000003
263.9 KB
243 CDS

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whole genome shotgun sequence
NZ_AAOF01000004
253.7 KB
253 CDS

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whole genome shotgun sequence
NZ_AAOF01000005
242.2 KB
252 CDS

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whole genome shotgun sequence
NZ_AAOF01000006
145.9 KB
126 CDS

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whole genome shotgun sequence
NZ_AAOF01000007
124.4 KB
125 CDS

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whole genome shotgun sequence
NZ_AAOF01000008
119.0 KB
117 CDS

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whole genome shotgun sequence
NZ_AAOF01000009
104.1 KB
102 CDS

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whole genome shotgun sequence
NZ_AAOF01000010
101.3 KB
88 CDS

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whole genome shotgun sequence
NZ_AAOF01000011
98.9 KB
88 CDS

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whole genome shotgun sequence
NZ_AAOF01000012
84.0 KB
88 CDS

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whole genome shotgun sequence
NZ_AAOF01000013
81.1 KB
78 CDS

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whole genome shotgun sequence
NZ_AAOF01000014
76.4 KB
68 CDS

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whole genome shotgun sequence
NZ_AAOF01000015
76.3 KB
74 CDS

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whole genome shotgun sequence
NZ_AAOF01000016
67.6 KB
69 CDS

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whole genome shotgun sequence
NZ_AAOF01000017
66.3 KB
78 CDS

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whole genome shotgun sequence
NZ_AAOF01000018
66.2 KB
82 CDS

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whole genome shotgun sequence
NZ_AAOF01000019
58.1 KB
66 CDS

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whole genome shotgun sequence
NZ_AAOF01000020
51.0 KB
46 CDS

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whole genome shotgun sequence
NZ_AAOF01000021
41.8 KB
44 CDS

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whole genome shotgun sequence
NZ_AAOF01000022
40.3 KB
49 CDS

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whole genome shotgun sequence
NZ_AAOF01000023
39.1 KB
30 CDS

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whole genome shotgun sequence
NZ_AAOF01000024
36.8 KB
45 CDS

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whole genome shotgun sequence
NZ_AAOF01000025
36.8 KB
37 CDS

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whole genome shotgun sequence
NZ_AAOF01000026
29.3 KB
28 CDS

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whole genome shotgun sequence
NZ_AAOF01000027
27.5 KB
27 CDS

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whole genome shotgun sequence
NZ_AAOF01000028
21.0 KB
20 CDS

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whole genome shotgun sequence
NZ_AAOF01000029
16.5 KB
16 CDS

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whole genome shotgun sequence
NZ_AAOF01000030
16.3 KB
13 CDS

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whole genome shotgun sequence
NZ_AAOF01000031
15.9 KB
18 CDS

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whole genome shotgun sequence
NZ_AAOF01000032
13.3 KB
15 CDS

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whole genome shotgun sequence
NZ_AAOF01000033
9.5 KB
9 CDS

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whole genome shotgun sequence
NZ_AAOF01000034
2.1 KB
3 CDS

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whole genome shotgun sequence
NZ_AAOF01000035
1.5 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOF01000036
1.5 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOF01000037
1.4 KB
3 CDS

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whole genome shotgun sequence
NZ_AAOF01000038
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_AAOF01000039
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_AAOF01000040
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOF01000041
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOF01000042
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOF01000043
1.0 KB
2 CDS

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Taxonomy

External Links

Nitrococcus mobilis Nb-231

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Sequences

PubMed Search for Nitrococcus mobilis Nb-231

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