Nitrosomonas eutropha C91

DOE Joint Genome Institute

Genome Size: 2.82 megabases, GC Content: 48.5%, Released Date: Sept. 13, 2006 #17259

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_008344
2.5 MB
2444 CDS

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plasmid1
NC_008341
63.6 KB
55 CDS

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plasmid2
NC_008342
54.3 KB
52 CDS

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References

Whole-genome analysis of the ammonia-oxidizing bacterium, Nitrosomonas eutropha C91: implications for niche adaptation
Stein,L.Y., Arp,D.J., Berube,P.M., Chain,P.S., Hauser,L., Jetten,M.S., Klotz,M.G., Larimer,F.W., Norton,J.M., Op den Camp,H.J., Shin,M. and Wei,X. Environ. Microbiol. 9 (12), 2993-3007 (2007)
PubMed, PubGet, HubMed

Taxonomy

External Links

Nitrosomonas eutropha C91

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Sequences

References

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