Oceanicola granulosus HTCC2516

J. Craig Venter Institute

GC Content: 70.4%, Released Date: March 1, 2006 #18279

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAOT01000001
370.7 KB
346 CDS

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whole genome shotgun sequence
NZ_AAOT01000002
201.4 KB
193 CDS

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whole genome shotgun sequence
NZ_AAOT01000003
179.2 KB
168 CDS

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whole genome shotgun sequence
NZ_AAOT01000004
162.6 KB
163 CDS

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whole genome shotgun sequence
NZ_AAOT01000005
152.6 KB
151 CDS

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whole genome shotgun sequence
NZ_AAOT01000006
143.6 KB
104 CDS

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whole genome shotgun sequence
NZ_AAOT01000007
124.1 KB
124 CDS

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whole genome shotgun sequence
NZ_AAOT01000008
110.2 KB
102 CDS

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whole genome shotgun sequence
NZ_AAOT01000009
109.8 KB
115 CDS

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whole genome shotgun sequence
NZ_AAOT01000010
101.6 KB
74 CDS

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whole genome shotgun sequence
NZ_AAOT01000011
101.3 KB
113 CDS

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whole genome shotgun sequence
NZ_AAOT01000012
90.2 KB
97 CDS

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whole genome shotgun sequence
NZ_AAOT01000013
88.2 KB
90 CDS

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whole genome shotgun sequence
NZ_AAOT01000014
79.1 KB
78 CDS

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whole genome shotgun sequence
NZ_AAOT01000015
77.9 KB
39 CDS

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whole genome shotgun sequence
NZ_AAOT01000016
72.7 KB
63 CDS

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whole genome shotgun sequence
NZ_AAOT01000017
72.1 KB
63 CDS

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whole genome shotgun sequence
NZ_AAOT01000018
66.0 KB
72 CDS

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whole genome shotgun sequence
NZ_AAOT01000019
65.4 KB
65 CDS

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whole genome shotgun sequence
NZ_AAOT01000020
64.3 KB
57 CDS

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whole genome shotgun sequence
NZ_AAOT01000021
62.0 KB
53 CDS

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whole genome shotgun sequence
NZ_AAOT01000022
61.3 KB
75 CDS

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whole genome shotgun sequence
NZ_AAOT01000023
60.7 KB
64 CDS

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whole genome shotgun sequence
NZ_AAOT01000024
56.7 KB
57 CDS

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whole genome shotgun sequence
NZ_AAOT01000025
55.1 KB
55 CDS

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whole genome shotgun sequence
NZ_AAOT01000026
54.6 KB
47 CDS

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whole genome shotgun sequence
NZ_AAOT01000027
52.6 KB
56 CDS

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whole genome shotgun sequence
NZ_AAOT01000028
51.3 KB
54 CDS

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whole genome shotgun sequence
NZ_AAOT01000029
51.0 KB
46 CDS

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whole genome shotgun sequence
NZ_AAOT01000030
48.1 KB
49 CDS

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whole genome shotgun sequence
NZ_AAOT01000031
45.9 KB
36 CDS

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whole genome shotgun sequence
NZ_AAOT01000032
44.7 KB
37 CDS

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whole genome shotgun sequence
NZ_AAOT01000033
44.4 KB
42 CDS

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whole genome shotgun sequence
NZ_AAOT01000034
43.5 KB
45 CDS

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whole genome shotgun sequence
NZ_AAOT01000035
41.8 KB
29 CDS

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whole genome shotgun sequence
NZ_AAOT01000036
39.4 KB
37 CDS

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whole genome shotgun sequence
NZ_AAOT01000037
38.5 KB
36 CDS

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whole genome shotgun sequence
NZ_AAOT01000038
34.3 KB
50 CDS

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whole genome shotgun sequence
NZ_AAOT01000039
33.3 KB
32 CDS

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whole genome shotgun sequence
NZ_AAOT01000040
31.0 KB
33 CDS

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whole genome shotgun sequence
NZ_AAOT01000041
29.8 KB
26 CDS

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whole genome shotgun sequence
NZ_AAOT01000042
28.8 KB
28 CDS

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whole genome shotgun sequence
NZ_AAOT01000043
27.6 KB
27 CDS

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whole genome shotgun sequence
NZ_AAOT01000044
25.3 KB
27 CDS

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whole genome shotgun sequence
NZ_AAOT01000045
23.5 KB
24 CDS

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whole genome shotgun sequence
NZ_AAOT01000046
22.3 KB
25 CDS

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whole genome shotgun sequence
NZ_AAOT01000047
20.5 KB
20 CDS

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whole genome shotgun sequence
NZ_AAOT01000048
20.5 KB
23 CDS

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whole genome shotgun sequence
NZ_AAOT01000049
20.2 KB
21 CDS

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whole genome shotgun sequence
NZ_AAOT01000050
18.7 KB
21 CDS

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whole genome shotgun sequence
NZ_AAOT01000051
18.3 KB
18 CDS

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whole genome shotgun sequence
NZ_AAOT01000052
17.2 KB
21 CDS

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whole genome shotgun sequence
NZ_AAOT01000053
16.3 KB
19 CDS

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whole genome shotgun sequence
NZ_AAOT01000054
16.3 KB
16 CDS

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whole genome shotgun sequence
NZ_AAOT01000055
16.3 KB
16 CDS

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whole genome shotgun sequence
NZ_AAOT01000056
15.8 KB
9 CDS

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whole genome shotgun sequence
NZ_AAOT01000057
15.2 KB
15 CDS

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whole genome shotgun sequence
NZ_AAOT01000058
15.2 KB
19 CDS

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whole genome shotgun sequence
NZ_AAOT01000059
14.9 KB
20 CDS

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whole genome shotgun sequence
NZ_AAOT01000060
14.1 KB
13 CDS

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whole genome shotgun sequence
NZ_AAOT01000061
13.2 KB
10 CDS

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whole genome shotgun sequence
NZ_AAOT01000062
12.9 KB
14 CDS

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whole genome shotgun sequence
NZ_AAOT01000063
12.1 KB
14 CDS

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whole genome shotgun sequence
NZ_AAOT01000064
11.5 KB
13 CDS

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whole genome shotgun sequence
NZ_AAOT01000065
10.8 KB
12 CDS

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whole genome shotgun sequence
NZ_AAOT01000066
10.8 KB
10 CDS

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whole genome shotgun sequence
NZ_AAOT01000067
10.7 KB
13 CDS

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whole genome shotgun sequence
NZ_AAOT01000068
9.9 KB
11 CDS

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whole genome shotgun sequence
NZ_AAOT01000069
8.9 KB
7 CDS

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whole genome shotgun sequence
NZ_AAOT01000070
8.5 KB
5 CDS

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whole genome shotgun sequence
NZ_AAOT01000071
7.9 KB
10 CDS

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whole genome shotgun sequence
NZ_AAOT01000072
6.5 KB
11 CDS

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whole genome shotgun sequence
NZ_AAOT01000073
5.4 KB
7 CDS

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whole genome shotgun sequence
NZ_AAOT01000074
5.0 KB
4 CDS

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whole genome shotgun sequence
NZ_AAOT01000075
4.7 KB
6 CDS

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whole genome shotgun sequence
NZ_AAOT01000076
4.3 KB
1 CDS

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whole genome shotgun sequence
NZ_AAOT01000077
3.8 KB
3 CDS

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whole genome shotgun sequence
NZ_AAOT01000078
3.8 KB
3 CDS

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whole genome shotgun sequence
NZ_AAOT01000079
3.2 KB
3 CDS

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whole genome shotgun sequence
NZ_AAOT01000080
2.5 KB
4 CDS

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whole genome shotgun sequence
NZ_AAOT01000081
2.0 KB
3 CDS

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whole genome shotgun sequence
NZ_AAOT01000082
1.9 KB
4 CDS

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whole genome shotgun sequence
NZ_AAOT01000083
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOT01000084
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOT01000085
1017 bytes
2 CDS

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Taxonomy

External Links

Oceanicola granulosus HTCC2516

Search Genome

Sequences

PubMed Search for Oceanicola granulosus HTCC2516

Related Genomes