Oenococcus oeni AWRIB429

The Australian Wine Research Institute (AWRI)

Genome Size: 1.9 megabases, GC Content: 37.9%, Released Date: March 3, 2010 #20506

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

429_contig_1, whole genome shotgun sequence
NZ_ACSE01000001
105.2 KB
118 CDS

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429_contig_2, whole genome shotgun sequence
NZ_ACSE01000002
72.7 KB
81 CDS

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429_contig_3, whole genome shotgun sequence
NZ_ACSE01000003
85.9 KB
90 CDS

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429_contig_4, whole genome shotgun sequence
NZ_ACSE01000004
119.2 KB
122 CDS

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429_contig_5, whole genome shotgun sequence
NZ_ACSE01000005
41.3 KB
44 CDS

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429_contig_6, whole genome shotgun sequence
NZ_ACSE01000006
41.1 KB
49 CDS

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429_contig_7, whole genome shotgun sequence
NZ_ACSE01000007
890 bytes
2 CDS

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429_contig_8, whole genome shotgun sequence
NZ_ACSE01000008
77.9 KB
99 CDS

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429_contig_9, whole genome shotgun sequence
NZ_ACSE01000009
35.6 KB
46 CDS

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429_contig_10, whole genome shotgun sequence
NZ_ACSE01000010
36.0 KB
50 CDS

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429_contig_11, whole genome shotgun sequence
NZ_ACSE01000011
4.9 KB
7 CDS

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429_contig_12, whole genome shotgun sequence
NZ_ACSE01000012
75.1 KB
92 CDS

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429_contig_13, whole genome shotgun sequence
NZ_ACSE01000013
8.4 KB
7 CDS

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429_contig_14, whole genome shotgun sequence
NZ_ACSE01000014
1.5 KB
2 CDS

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429_contig_15, whole genome shotgun sequence
NZ_ACSE01000015
36.7 KB
52 CDS

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429_contig_16, whole genome shotgun sequence
NZ_ACSE01000016
152.0 KB
168 CDS

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429_contig_17, whole genome shotgun sequence
NZ_ACSE01000017
791 bytes
1 CDS

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429_contig_18, whole genome shotgun sequence
NZ_ACSE01000018
4.7 KB
6 CDS

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429_contig_19, whole genome shotgun sequence
NZ_ACSE01000019
5.1 KB
7 CDS

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429_contig_20, whole genome shotgun sequence
NZ_ACSE01000020
62.6 KB
64 CDS

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429_contig_21, whole genome shotgun sequence
NZ_ACSE01000021
83.1 KB
87 CDS

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429_contig_22, whole genome shotgun sequence
NZ_ACSE01000022
2.5 KB
3 CDS

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429_contig_23, whole genome shotgun sequence
NZ_ACSE01000023
7.1 KB
8 CDS

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429_contig_24, whole genome shotgun sequence
NZ_ACSE01000024
72.7 KB
88 CDS

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429_contig_25, whole genome shotgun sequence
NZ_ACSE01000025
27.6 KB
31 CDS

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429_contig_26, whole genome shotgun sequence
NZ_ACSE01000026
27.5 KB
39 CDS

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429_contig_27, whole genome shotgun sequence
NZ_ACSE01000027
144.8 KB
139 CDS

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429_contig_28, whole genome shotgun sequence
NZ_ACSE01000028
38.6 KB
41 CDS

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429_contig_29, whole genome shotgun sequence
NZ_ACSE01000029
198.7 KB
210 CDS

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429_contig_30, whole genome shotgun sequence
NZ_ACSE01000030
90.9 KB
106 CDS

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429_contig_31, whole genome shotgun sequence
NZ_ACSE01000031
22.5 KB
26 CDS

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429_contig_32, whole genome shotgun sequence
NZ_ACSE01000032
35.3 KB
42 CDS

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429_contig_33, whole genome shotgun sequence
NZ_ACSE01000033
34.2 KB
49 CDS

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429_contig_34, whole genome shotgun sequence
NZ_ACSE01000034
33.1 KB
45 CDS

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429_contig_35, whole genome shotgun sequence
NZ_ACSE01000035
14.4 KB
19 CDS

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429_contig_36, whole genome shotgun sequence
NZ_ACSE01000036
11.6 KB
15 CDS

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429_contig_37, whole genome shotgun sequence
NZ_ACSE01000037
10.7 KB
20 CDS

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429_contig_38, whole genome shotgun sequence
NZ_ACSE01000038
8.4 KB
7 CDS

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429_contig_39, whole genome shotgun sequence
NZ_ACSE01000039
7.9 KB
9 CDS

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429_contig_40, whole genome shotgun sequence
NZ_ACSE01000040
6.7 KB
8 CDS

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429_contig_41, whole genome shotgun sequence
NZ_ACSE01000041
6.2 KB
14 CDS

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429_contig_42, whole genome shotgun sequence
NZ_ACSE01000042
5.7 KB
9 CDS

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429_contig_43, whole genome shotgun sequence
NZ_ACSE01000043
4.6 KB
4 CDS

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429_contig_44, whole genome shotgun sequence
NZ_ACSE01000044
3.5 KB
6 CDS

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429_contig_45, whole genome shotgun sequence
NZ_ACSE01000045
2.1 KB
3 CDS

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429_contig_46, whole genome shotgun sequence
NZ_ACSE01000046
1.9 KB
2 CDS

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429_contig_47, whole genome shotgun sequence
NZ_ACSE01000047
1.7 KB
3 CDS

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429_contig_48, whole genome shotgun sequence
NZ_ACSE01000048
1.7 KB
3 CDS

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429_contig_49, whole genome shotgun sequence
NZ_ACSE01000049
1.7 KB
4 CDS

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429_contig_50, whole genome shotgun sequence
NZ_ACSE01000050
1.3 KB
4 CDS

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429_contig_51, whole genome shotgun sequence
NZ_ACSE01000051
1.2 KB
0 CDS

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429_contig_52, whole genome shotgun sequence
NZ_ACSE01000052
944 bytes
2 CDS

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429_contig_53, whole genome shotgun sequence
NZ_ACSE01000053
839 bytes
1 CDS

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429_contig_54, whole genome shotgun sequence
NZ_ACSE01000054
812 bytes
3 CDS

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429_contig_55, whole genome shotgun sequence
NZ_ACSE01000055
799 bytes
2 CDS

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429_contig_56, whole genome shotgun sequence
NZ_ACSE01000056
752 bytes
1 CDS

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429_contig_57, whole genome shotgun sequence
NZ_ACSE01000057
596 bytes
0 CDS

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429_contig_58, whole genome shotgun sequence
NZ_ACSE01000058
540 bytes
1 CDS

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References

Genotypic diversity in Oenococcus oeni by high-density microarray comparative genome hybridization and whole genome sequencing
Borneman,A.R., Bartowsky,E.J., McCarthy,J. and Chambers,P.J. Appl. Microbiol. Biotechnol. 86 (2), 681-691 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Oenococcus oeni AWRIB429

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Sequences

References

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