Paenibacillus polymyxa SC2

Shandong Agricultural University , The Chinese Academy of Agricultural Science , Tianjin Biochip Corporation

Genome Size: 6.21 megabases, Released Date: Oct. 19, 2010 #19987

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
CP002213
5.5 MB
5407 CDS

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plasmid pSC2
CP002214
498.2 KB
626 CDS

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References

Complete Genome Sequence of Paenibacillus polymyxa SC2, a Strain of Plant Growth-Promoting Rhizobacterium with Broad-Spectrum Antimicrobial Activity
Ma,M., Wang,C., Ding,Y., Li,L., Shen,D., Jiang,X., Guan,D., Cao,F., Chen,H., Feng,R., Wang,X., Ge,Y., Yao,L., Bing,X., Yang,X., Li,J. and Du,B. J. Bacteriol. 193 (1), 311-312 (2011)
PubMed, PubGet, HubMed

Taxonomy

External Links

Paenibacillus polymyxa SC2

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Sequences

References

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