Pantoea sp. aB

DOE Joint Genome Institute

Genome Size: 4.8 megabases, Released Date: Aug. 20, 2010 #20513

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

ctg00019, whole genome shotgun sequence
NZ_AEDL01000001
503.1 KB
504 CDS

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ctg00039, whole genome shotgun sequence
NZ_AEDL01000002
487.9 KB
453 CDS

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ctg00024, whole genome shotgun sequence
NZ_AEDL01000003
464.4 KB
470 CDS

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ctg00038, whole genome shotgun sequence
NZ_AEDL01000004
424.1 KB
388 CDS

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ctg00030, whole genome shotgun sequence
NZ_AEDL01000005
348.8 KB
323 CDS

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ctg00040, whole genome shotgun sequence
NZ_AEDL01000006
331.8 KB
322 CDS

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ctg00026, whole genome shotgun sequence
NZ_AEDL01000007
255.6 KB
207 CDS

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ctg00023, whole genome shotgun sequence
NZ_AEDL01000008
243.6 KB
237 CDS

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ctg00032, whole genome shotgun sequence
NZ_AEDL01000009
233.6 KB
222 CDS

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ctg00034, whole genome shotgun sequence
NZ_AEDL01000010
223.7 KB
201 CDS

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ctg00027, whole genome shotgun sequence
NZ_AEDL01000011
218.7 KB
217 CDS

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ctg00037, whole genome shotgun sequence
NZ_AEDL01000012
158.1 KB
142 CDS

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ctg00028, whole genome shotgun sequence
NZ_AEDL01000013
152.9 KB
150 CDS

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ctg00072, whole genome shotgun sequence
NZ_AEDL01000014
128.0 KB
112 CDS

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ctg00025, whole genome shotgun sequence
NZ_AEDL01000015
124.4 KB
129 CDS

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ctg00033, whole genome shotgun sequence
NZ_AEDL01000016
113.6 KB
113 CDS

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ctg00071, whole genome shotgun sequence
NZ_AEDL01000017
90.5 KB
105 CDS

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ctg00029, whole genome shotgun sequence
NZ_AEDL01000018
86.4 KB
79 CDS

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ctg00031, whole genome shotgun sequence
NZ_AEDL01000019
27.5 KB
47 CDS

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ctg00036, whole genome shotgun sequence
NZ_AEDL01000020
25.1 KB
21 CDS

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ctg00022, whole genome shotgun sequence
NZ_AEDL01000021
14.3 KB
13 CDS

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ctg00041, whole genome shotgun sequence
NZ_AEDL01000022
8.2 KB
7 CDS

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ctg00018, whole genome shotgun sequence
NZ_AEDL01000023
6.3 KB
5 CDS

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ctg00035, whole genome shotgun sequence
NZ_AEDL01000024
5.0 KB
4 CDS

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ctg00021, whole genome shotgun sequence
NZ_AEDL01000025
3.9 KB
6 CDS

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ctg00003, whole genome shotgun sequence
NZ_AEDL01000026
3.1 KB
3 CDS

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ctg00047, whole genome shotgun sequence
NZ_AEDL01000027
3.0 KB
0 CDS

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ctg00068, whole genome shotgun sequence
NZ_AEDL01000028
2.7 KB
7 CDS

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ctg00007, whole genome shotgun sequence
NZ_AEDL01000029
1.7 KB
0 CDS

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ctg00051, whole genome shotgun sequence
NZ_AEDL01000030
844 bytes
1 CDS

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ctg00066, whole genome shotgun sequence
NZ_AEDL01000031
801 bytes
1 CDS

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ctg00067, whole genome shotgun sequence
NZ_AEDL01000032
801 bytes
1 CDS

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ctg00014, whole genome shotgun sequence
NZ_AEDL01000033
527 bytes
1 CDS

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Taxonomy

External Links

Pantoea sp. aB

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Sequences

PubMed Search for Pantoea sp. aB

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