Pantoea sp. At-9b

JGI

Released Date: Sept. 14, 2009 #18286

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACYJ01000001
413.5 KB
385 CDS

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whole genome shotgun sequence
NZ_ACYJ01000002
296.9 KB
288 CDS

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whole genome shotgun sequence
NZ_ACYJ01000003
266.0 KB
266 CDS

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whole genome shotgun sequence
NZ_ACYJ01000004
252.1 KB
245 CDS

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whole genome shotgun sequence
NZ_ACYJ01000005
243.4 KB
234 CDS

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whole genome shotgun sequence
NZ_ACYJ01000006
230.8 KB
262 CDS

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whole genome shotgun sequence
NZ_ACYJ01000007
216.5 KB
213 CDS

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whole genome shotgun sequence
NZ_ACYJ01000008
194.0 KB
195 CDS

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whole genome shotgun sequence
NZ_ACYJ01000009
189.7 KB
174 CDS

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whole genome shotgun sequence
NZ_ACYJ01000010
168.5 KB
143 CDS

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whole genome shotgun sequence
NZ_ACYJ01000011
152.2 KB
185 CDS

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whole genome shotgun sequence
NZ_ACYJ01000012
151.9 KB
163 CDS

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whole genome shotgun sequence
NZ_ACYJ01000013
150.8 KB
150 CDS

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whole genome shotgun sequence
NZ_ACYJ01000014
148.2 KB
138 CDS

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whole genome shotgun sequence
NZ_ACYJ01000015
141.1 KB
120 CDS

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whole genome shotgun sequence
NZ_ACYJ01000016
129.8 KB
129 CDS

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whole genome shotgun sequence
NZ_ACYJ01000017
125.7 KB
114 CDS

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whole genome shotgun sequence
NZ_ACYJ01000018
122.2 KB
119 CDS

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whole genome shotgun sequence
NZ_ACYJ01000019
117.9 KB
111 CDS

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whole genome shotgun sequence
NZ_ACYJ01000020
113.0 KB
110 CDS

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whole genome shotgun sequence
NZ_ACYJ01000021
106.7 KB
114 CDS

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whole genome shotgun sequence
NZ_ACYJ01000022
100.6 KB
96 CDS

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whole genome shotgun sequence
NZ_ACYJ01000023
92.3 KB
79 CDS

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whole genome shotgun sequence
NZ_ACYJ01000024
86.7 KB
86 CDS

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whole genome shotgun sequence
NZ_ACYJ01000025
80.7 KB
80 CDS

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whole genome shotgun sequence
NZ_ACYJ01000026
78.3 KB
71 CDS

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whole genome shotgun sequence
NZ_ACYJ01000027
77.6 KB
95 CDS

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whole genome shotgun sequence
NZ_ACYJ01000028
77.0 KB
75 CDS

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whole genome shotgun sequence
NZ_ACYJ01000029
74.7 KB
89 CDS

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whole genome shotgun sequence
NZ_ACYJ01000030
72.8 KB
70 CDS

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whole genome shotgun sequence
NZ_ACYJ01000031
72.7 KB
75 CDS

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whole genome shotgun sequence
NZ_ACYJ01000032
72.3 KB
54 CDS

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whole genome shotgun sequence
NZ_ACYJ01000033
70.7 KB
63 CDS

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whole genome shotgun sequence
NZ_ACYJ01000034
67.9 KB
61 CDS

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whole genome shotgun sequence
NZ_ACYJ01000035
59.4 KB
55 CDS

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whole genome shotgun sequence
NZ_ACYJ01000036
59.0 KB
56 CDS

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whole genome shotgun sequence
NZ_ACYJ01000037
54.9 KB
56 CDS

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whole genome shotgun sequence
NZ_ACYJ01000038
53.0 KB
52 CDS

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whole genome shotgun sequence
NZ_ACYJ01000039
49.8 KB
40 CDS

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whole genome shotgun sequence
NZ_ACYJ01000040
47.9 KB
46 CDS

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whole genome shotgun sequence
NZ_ACYJ01000041
47.0 KB
52 CDS

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whole genome shotgun sequence
NZ_ACYJ01000042
42.9 KB
39 CDS

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whole genome shotgun sequence
NZ_ACYJ01000043
36.8 KB
36 CDS

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whole genome shotgun sequence
NZ_ACYJ01000044
36.5 KB
36 CDS

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whole genome shotgun sequence
NZ_ACYJ01000045
36.5 KB
37 CDS

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whole genome shotgun sequence
NZ_ACYJ01000046
32.1 KB
24 CDS

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whole genome shotgun sequence
NZ_ACYJ01000047
30.9 KB
29 CDS

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whole genome shotgun sequence
NZ_ACYJ01000048
30.0 KB
31 CDS

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whole genome shotgun sequence
NZ_ACYJ01000049
29.4 KB
26 CDS

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whole genome shotgun sequence
NZ_ACYJ01000050
28.4 KB
26 CDS

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whole genome shotgun sequence
NZ_ACYJ01000051
28.0 KB
20 CDS

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whole genome shotgun sequence
NZ_ACYJ01000052
27.2 KB
32 CDS

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whole genome shotgun sequence
NZ_ACYJ01000053
24.9 KB
45 CDS

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whole genome shotgun sequence
NZ_ACYJ01000054
24.8 KB
21 CDS

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whole genome shotgun sequence
NZ_ACYJ01000055
23.5 KB
21 CDS

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whole genome shotgun sequence
NZ_ACYJ01000056
22.2 KB
18 CDS

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whole genome shotgun sequence
NZ_ACYJ01000057
21.9 KB
22 CDS

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whole genome shotgun sequence
NZ_ACYJ01000058
21.9 KB
16 CDS

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whole genome shotgun sequence
NZ_ACYJ01000059
21.8 KB
22 CDS

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whole genome shotgun sequence
NZ_ACYJ01000060
18.9 KB
19 CDS

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whole genome shotgun sequence
NZ_ACYJ01000061
17.4 KB
20 CDS

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whole genome shotgun sequence
NZ_ACYJ01000062
16.7 KB
14 CDS

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whole genome shotgun sequence
NZ_ACYJ01000063
16.5 KB
15 CDS

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whole genome shotgun sequence
NZ_ACYJ01000064
14.7 KB
14 CDS

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whole genome shotgun sequence
NZ_ACYJ01000065
13.3 KB
13 CDS

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whole genome shotgun sequence
NZ_ACYJ01000066
13.0 KB
11 CDS

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whole genome shotgun sequence
NZ_ACYJ01000067
12.7 KB
10 CDS

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whole genome shotgun sequence
NZ_ACYJ01000068
12.3 KB
10 CDS

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whole genome shotgun sequence
NZ_ACYJ01000069
11.8 KB
10 CDS

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whole genome shotgun sequence
NZ_ACYJ01000070
11.6 KB
12 CDS

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whole genome shotgun sequence
NZ_ACYJ01000071
11.5 KB
9 CDS

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whole genome shotgun sequence
NZ_ACYJ01000072
11.1 KB
8 CDS

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whole genome shotgun sequence
NZ_ACYJ01000073
9.4 KB
10 CDS

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whole genome shotgun sequence
NZ_ACYJ01000074
8.6 KB
7 CDS

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whole genome shotgun sequence
NZ_ACYJ01000075
8.4 KB
8 CDS

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whole genome shotgun sequence
NZ_ACYJ01000076
8.2 KB
7 CDS

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whole genome shotgun sequence
NZ_ACYJ01000077
7.8 KB
7 CDS

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whole genome shotgun sequence
NZ_ACYJ01000078
7.2 KB
7 CDS

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whole genome shotgun sequence
NZ_ACYJ01000079
6.4 KB
6 CDS

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whole genome shotgun sequence
NZ_ACYJ01000080
5.0 KB
9 CDS

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whole genome shotgun sequence
NZ_ACYJ01000081
4.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ACYJ01000082
3.6 KB
4 CDS

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whole genome shotgun sequence
NZ_ACYJ01000083
2.6 KB
3 CDS

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whole genome shotgun sequence
NZ_ACYJ01000084
2.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ACYJ01000085
1.5 KB
1 CDS

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whole genome shotgun sequence
NZ_ACYJ01000086
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ACYJ01000087
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ACYJ01000088
1018 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACYJ01000089
1000 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACYJ01000090
837 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACYJ01000091
705 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACYJ01000092
567 bytes
0 CDS

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Taxonomy

External Links

Pantoea sp. At-9b

Search Genome

Sequences

PubMed Search for Pantoea sp. At-9b

Related Genomes