Parabacteroides merdae ATCC 43184

Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine

GC Content: 45.3%, Released Date: March 6, 2007 #18288

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAXE02000001
46.2 KB
40 CDS

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whole genome shotgun sequence
NZ_AAXE02000002
279.4 KB
243 CDS

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whole genome shotgun sequence
NZ_AAXE02000003
46.2 KB
50 CDS

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whole genome shotgun sequence
NZ_AAXE02000004
1.9 KB
4 CDS

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whole genome shotgun sequence
NZ_AAXE02000005
680 bytes
3 CDS

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whole genome shotgun sequence
NZ_AAXE02000006
738 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000007
622 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000008
544 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000009
224 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000010
755 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000011
796 bytes
2 CDS

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whole genome shotgun sequence
NZ_AAXE02000012
755 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000013
874 bytes
2 CDS

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whole genome shotgun sequence
NZ_AAXE02000014
858 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000015
738 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000016
742 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000017
1.2 KB
3 CDS

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whole genome shotgun sequence
NZ_AAXE02000018
661 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000019
1.6 KB
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000020
655 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000021
159.6 KB
169 CDS

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whole genome shotgun sequence
NZ_AAXE02000022
815 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000023
120.4 KB
112 CDS

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whole genome shotgun sequence
NZ_AAXE02000024
969 bytes
2 CDS

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whole genome shotgun sequence
NZ_AAXE02000025
813 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000026
770 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000027
870 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000028
124 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000029
491 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000030
97 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000031
118 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000032
99 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000033
124 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000034
117 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000035
97 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000036
957 bytes
2 CDS

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whole genome shotgun sequence
NZ_AAXE02000037
813 bytes
3 CDS

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whole genome shotgun sequence
NZ_AAXE02000038
860 bytes
2 CDS

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whole genome shotgun sequence
NZ_AAXE02000039
925 bytes
3 CDS

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whole genome shotgun sequence
NZ_AAXE02000040
792 bytes
2 CDS

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whole genome shotgun sequence
NZ_AAXE02000041
842 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000042
830 bytes
2 CDS

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whole genome shotgun sequence
NZ_AAXE02000043
763 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000044
655 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000045
863 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000046
1.0 KB
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000047
825 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000048
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_AAXE02000049
1.8 KB
3 CDS

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whole genome shotgun sequence
NZ_AAXE02000050
2.0 KB
2 CDS

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whole genome shotgun sequence
NZ_AAXE02000051
1.8 KB
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000052
834 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000053
868 bytes
2 CDS

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whole genome shotgun sequence
NZ_AAXE02000054
1.4 KB
3 CDS

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whole genome shotgun sequence
NZ_AAXE02000055
824 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000056
923 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000057
926 bytes
2 CDS

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whole genome shotgun sequence
NZ_AAXE02000058
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000059
982 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000060
937 bytes
2 CDS

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whole genome shotgun sequence
NZ_AAXE02000061
32.0 KB
24 CDS

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whole genome shotgun sequence
NZ_AAXE02000062
294.6 KB
293 CDS

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whole genome shotgun sequence
NZ_AAXE02000063
1020 bytes
3 CDS

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whole genome shotgun sequence
NZ_AAXE02000064
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000065
26.8 KB
27 CDS

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whole genome shotgun sequence
NZ_AAXE02000066
903 bytes
2 CDS

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whole genome shotgun sequence
NZ_AAXE02000067
1.2 KB
3 CDS

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whole genome shotgun sequence
NZ_AAXE02000068
796 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000069
1.5 KB
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000070
12.0 KB
12 CDS

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whole genome shotgun sequence
NZ_AAXE02000071
1.5 KB
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000072
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000073
1.4 KB
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000074
2.3 KB
5 CDS

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whole genome shotgun sequence
NZ_AAXE02000075
8.4 KB
13 CDS

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whole genome shotgun sequence
NZ_AAXE02000076
10.8 KB
12 CDS

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whole genome shotgun sequence
NZ_AAXE02000077
1017 bytes
2 CDS

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whole genome shotgun sequence
NZ_AAXE02000078
852 bytes
2 CDS

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whole genome shotgun sequence
NZ_AAXE02000079
964 bytes
2 CDS

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whole genome shotgun sequence
NZ_AAXE02000080
1.0 KB
3 CDS

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whole genome shotgun sequence
NZ_AAXE02000081
1.4 KB
3 CDS

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whole genome shotgun sequence
NZ_AAXE02000082
888 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000083
134.3 KB
152 CDS

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whole genome shotgun sequence
NZ_AAXE02000084
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000085
380 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000086
796 bytes
3 CDS

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whole genome shotgun sequence
NZ_AAXE02000087
569 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000088
430.4 KB
398 CDS

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whole genome shotgun sequence
NZ_AAXE02000089
598 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000090
901 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000091
864 bytes
3 CDS

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whole genome shotgun sequence
NZ_AAXE02000092
2.8 KB
6 CDS

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whole genome shotgun sequence
NZ_AAXE02000093
610 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000094
773 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000095
678 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000096
808 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000097
773 bytes
2 CDS

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whole genome shotgun sequence
NZ_AAXE02000098
771 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000099
862 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAXE02000100
788 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAXE02000101
30.2 KB
25 CDS

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whole genome shotgun sequence
NZ_AAXE02000102
508.6 KB
536 CDS

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whole genome shotgun sequence
NZ_AAXE02000103
367.7 KB
384 CDS

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whole genome shotgun sequence
NZ_AAXE02000104
426.7 KB
405 CDS

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whole genome shotgun sequence
NZ_AAXE02000105
52.2 KB
55 CDS

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whole genome shotgun sequence
NZ_AAXE02000106
73.3 KB
82 CDS

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whole genome shotgun sequence
NZ_AAXE02000107
274.9 KB
271 CDS

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whole genome shotgun sequence
NZ_AAXE02000108
133.0 KB
127 CDS

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whole genome shotgun sequence
NZ_AAXE02000109
50.2 KB
51 CDS

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whole genome shotgun sequence
NZ_AAXE02000110
3.5 KB
4 CDS

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whole genome shotgun sequence
NZ_AAXE02000111
161.0 KB
181 CDS

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whole genome shotgun sequence
NZ_AAXE02000112
417.7 KB
398 CDS

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whole genome shotgun sequence
NZ_AAXE02000113
3.6 KB
5 CDS

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whole genome shotgun sequence
NZ_AAXE02000114
1.9 KB
2 CDS

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whole genome shotgun sequence
NZ_AAXE02000115
780 bytes
3 CDS

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whole genome shotgun sequence
NZ_AAXE02000116
1.5 KB
4 CDS

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whole genome shotgun sequence
NZ_AAXE02000117
2.4 KB
8 CDS

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whole genome shotgun sequence
NZ_AAXE02000118
139.9 KB
184 CDS

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Taxonomy

External Links

Parabacteroides merdae ATCC 43184

Search Genome

Sequences

PubMed Search for Parabacteroides merdae ATCC 43184

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