Parachlamydia acanthamoebae str. Hall's coccus

University of Lausanne

Genome Size: 3.0 megabases, GC Content: 39.0%, Released Date: Dec. 23, 2009 #20515

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACZE01000001
54.7 KB
38 CDS

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whole genome shotgun sequence
NZ_ACZE01000002
47.4 KB
50 CDS

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whole genome shotgun sequence
NZ_ACZE01000003
48.7 KB
44 CDS

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whole genome shotgun sequence
NZ_ACZE01000004
225.1 KB
207 CDS

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whole genome shotgun sequence
NZ_ACZE01000005
42.8 KB
42 CDS

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whole genome shotgun sequence
NZ_ACZE01000006
3.2 KB
5 CDS

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whole genome shotgun sequence
NZ_ACZE01000007
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ACZE01000008
84.4 KB
68 CDS

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whole genome shotgun sequence
NZ_ACZE01000009
24.9 KB
31 CDS

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whole genome shotgun sequence
NZ_ACZE01000010
42.4 KB
53 CDS

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whole genome shotgun sequence
NZ_ACZE01000011
23.0 KB
23 CDS

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whole genome shotgun sequence
NZ_ACZE01000012
51.9 KB
52 CDS

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whole genome shotgun sequence
NZ_ACZE01000013
164.8 KB
140 CDS

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whole genome shotgun sequence
NZ_ACZE01000014
9.7 KB
10 CDS

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whole genome shotgun sequence
NZ_ACZE01000015
115.8 KB
111 CDS

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whole genome shotgun sequence
NZ_ACZE01000016
18.3 KB
15 CDS

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whole genome shotgun sequence
NZ_ACZE01000017
636 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACZE01000018
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ACZE01000019
634 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACZE01000020
238.7 KB
228 CDS

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whole genome shotgun sequence
NZ_ACZE01000021
16.0 KB
14 CDS

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whole genome shotgun sequence
NZ_ACZE01000022
5.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ACZE01000023
129.8 KB
136 CDS

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whole genome shotgun sequence
NZ_ACZE01000024
3.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ACZE01000025
30.8 KB
21 CDS

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whole genome shotgun sequence
NZ_ACZE01000026
50.9 KB
51 CDS

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whole genome shotgun sequence
NZ_ACZE01000027
17.0 KB
17 CDS

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whole genome shotgun sequence
NZ_ACZE01000028
6.9 KB
4 CDS

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whole genome shotgun sequence
NZ_ACZE01000029
30.5 KB
40 CDS

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whole genome shotgun sequence
NZ_ACZE01000030
2.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ACZE01000031
916 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACZE01000032
839 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACZE01000033
633 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACZE01000034
11.9 KB
12 CDS

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whole genome shotgun sequence
NZ_ACZE01000035
5.2 KB
5 CDS

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whole genome shotgun sequence
NZ_ACZE01000036
783 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACZE01000037
685 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACZE01000038
113.1 KB
112 CDS

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whole genome shotgun sequence
NZ_ACZE01000039
62.8 KB
62 CDS

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whole genome shotgun sequence
NZ_ACZE01000040
63.6 KB
60 CDS

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whole genome shotgun sequence
NZ_ACZE01000041
148.8 KB
134 CDS

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whole genome shotgun sequence
NZ_ACZE01000042
10.7 KB
9 CDS

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whole genome shotgun sequence
NZ_ACZE01000043
14.1 KB
9 CDS

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whole genome shotgun sequence
NZ_ACZE01000044
39.7 KB
36 CDS

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whole genome shotgun sequence
NZ_ACZE01000045
662 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACZE01000046
3.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ACZE01000047
11.9 KB
10 CDS

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whole genome shotgun sequence
NZ_ACZE01000048
30.0 KB
32 CDS

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whole genome shotgun sequence
NZ_ACZE01000049
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ACZE01000050
2.2 KB
6 CDS

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whole genome shotgun sequence
NZ_ACZE01000051
57.7 KB
38 CDS

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whole genome shotgun sequence
NZ_ACZE01000052
79.3 KB
83 CDS

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whole genome shotgun sequence
NZ_ACZE01000053
1.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ACZE01000054
9.6 KB
12 CDS

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whole genome shotgun sequence
NZ_ACZE01000055
6.2 KB
6 CDS

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whole genome shotgun sequence
NZ_ACZE01000056
38.4 KB
45 CDS

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whole genome shotgun sequence
NZ_ACZE01000057
8.6 KB
8 CDS

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whole genome shotgun sequence
NZ_ACZE01000058
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ACZE01000059
1.7 KB
1 CDS

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whole genome shotgun sequence
NZ_ACZE01000060
6.6 KB
10 CDS

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whole genome shotgun sequence
NZ_ACZE01000061
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ACZE01000062
99.6 KB
103 CDS

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whole genome shotgun sequence
NZ_ACZE01000063
42.5 KB
46 CDS

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whole genome shotgun sequence
NZ_ACZE01000064
128.3 KB
125 CDS

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whole genome shotgun sequence
NZ_ACZE01000065
947 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACZE01000066
102.2 KB
87 CDS

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whole genome shotgun sequence
NZ_ACZE01000067
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ACZE01000068
53.7 KB
56 CDS

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whole genome shotgun sequence
NZ_ACZE01000069
34.7 KB
36 CDS

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whole genome shotgun sequence
NZ_ACZE01000070
887 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACZE01000071
740 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACZE01000072
12.5 KB
21 CDS

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whole genome shotgun sequence
NZ_ACZE01000073
1.6 KB
1 CDS

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whole genome shotgun sequence
NZ_ACZE01000074
706 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACZE01000075
40.2 KB
42 CDS

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whole genome shotgun sequence
NZ_ACZE01000076
3.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ACZE01000077
3.5 KB
6 CDS

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whole genome shotgun sequence
NZ_ACZE01000078
1.6 KB
4 CDS

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whole genome shotgun sequence
NZ_ACZE01000079
861 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACZE01000080
968 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACZE01000081
628 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACZE01000082
738 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACZE01000083
576 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACZE01000084
3.6 KB
7 CDS

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whole genome shotgun sequence
NZ_ACZE01000085
42.4 KB
41 CDS

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whole genome shotgun sequence
NZ_ACZE01000086
18.6 KB
12 CDS

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whole genome shotgun sequence
NZ_ACZE01000087
1.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ACZE01000088
37.5 KB
28 CDS

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whole genome shotgun sequence
NZ_ACZE01000089
1.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ACZE01000090
2.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ACZE01000091
5.5 KB
10 CDS

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whole genome shotgun sequence
NZ_ACZE01000092
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ACZE01000093
17.6 KB
28 CDS

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whole genome shotgun sequence
NZ_ACZE01000094
795 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACZE01000095
9.8 KB
10 CDS

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References

High throughput sequencing and proteomics to identify immunogenic proteins of a new pathogen: the dirty genome approach
Greub,G., Kebbi-Beghdadi,C., Bertelli,C., Collyn,F., Riederer,B.M., Yersin,C., Croxatto,A. and Raoult,D. PLoS ONE 4 (12), E8423 (2009)
PubMed, PubGet, HubMed
High throughput sequencing and proteomics to identify immunogenic proteins of a new pathogen: the dirty genome approach
Greub,G., Kebbi-Beghdadi,C., Bertelli,C., Collyn,F., Riederer,B.M., Yersin,C., Croxatto,A. and Raoult,D. PLoS ONE 4 (12), E8423 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Parachlamydia acanthamoebae str. Hall's coccus

Search Genome

Sequences

References

Related Genomes