Pedobacter saltans DSM 12145

JGI

Genome Size: 4.6 megabases, Released Date: Dec. 6, 2010 #20521

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

Psalt_Contig93, whole genome shotgun sequence
NZ_AEKX01000001
987.5 KB
0 CDS

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Psalt_Contig92, whole genome shotgun sequence
NZ_AEKX01000002
716.6 KB
581 CDS

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Psalt_Contig91, whole genome shotgun sequence
NZ_AEKX01000003
540.3 KB
472 CDS

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Psalt_Contig89, whole genome shotgun sequence
NZ_AEKX01000004
357.4 KB
289 CDS

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Psalt_Contig88, whole genome shotgun sequence
NZ_AEKX01000005
355.3 KB
316 CDS

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Psalt_Contig90, whole genome shotgun sequence
NZ_AEKX01000006
342.8 KB
309 CDS

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Psalt_Contig86, whole genome shotgun sequence
NZ_AEKX01000007
213.9 KB
174 CDS

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Psalt_Contig87, whole genome shotgun sequence
NZ_AEKX01000008
202.0 KB
150 CDS

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Psalt_Contig84, whole genome shotgun sequence
NZ_AEKX01000009
177.4 KB
168 CDS

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Psalt_Contig85, whole genome shotgun sequence
NZ_AEKX01000010
171.2 KB
148 CDS

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Psalt_Contig82, whole genome shotgun sequence
NZ_AEKX01000011
145.3 KB
120 CDS

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Psalt_Contig83, whole genome shotgun sequence
NZ_AEKX01000012
118.6 KB
145 CDS

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Psalt_Contig80, whole genome shotgun sequence
NZ_AEKX01000013
115.1 KB
93 CDS

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Psalt_Contig81, whole genome shotgun sequence
NZ_AEKX01000014
61.2 KB
54 CDS

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Psalt_Contig79, whole genome shotgun sequence
NZ_AEKX01000015
4.2 KB
3 CDS

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Psalt_Contig74, whole genome shotgun sequence
NZ_AEKX01000016
2.0 KB
2 CDS

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Psalt_Contig5, whole genome shotgun sequence
NZ_AEKX01000017
1.5 KB
1 CDS

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Psalt_Contig11, whole genome shotgun sequence
NZ_AEKX01000018
1.5 KB
0 CDS

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Psalt_Contig76, whole genome shotgun sequence
NZ_AEKX01000019
1.3 KB
1 CDS

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Psalt_Contig77, whole genome shotgun sequence
NZ_AEKX01000020
1.1 KB
1 CDS

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Psalt_Contig78, whole genome shotgun sequence
NZ_AEKX01000021
848 bytes
1 CDS

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Psalt_Contig75, whole genome shotgun sequence
NZ_AEKX01000022
681 bytes
1 CDS

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Psalt_Contig8, whole genome shotgun sequence
NZ_AEKX01000023
628 bytes
1 CDS

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Taxonomy

External Links

Pedobacter saltans DSM 12145

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Sequences

PubMed Search for Pedobacter saltans DSM 12145

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