Pedobacter sp. BAL39

J. Craig Venter Institute

GC Content: 44.9%, Released Date: June 20, 2007 #18294

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABCM01000001
499.0 KB
478 CDS

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whole genome shotgun sequence
NZ_ABCM01000002
476.5 KB
428 CDS

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whole genome shotgun sequence
NZ_ABCM01000003
409.8 KB
421 CDS

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whole genome shotgun sequence
NZ_ABCM01000004
388.9 KB
369 CDS

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whole genome shotgun sequence
NZ_ABCM01000005
328.8 KB
273 CDS

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whole genome shotgun sequence
NZ_ABCM01000006
296.2 KB
270 CDS

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whole genome shotgun sequence
NZ_ABCM01000007
242.2 KB
218 CDS

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whole genome shotgun sequence
NZ_ABCM01000008
233.4 KB
212 CDS

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whole genome shotgun sequence
NZ_ABCM01000009
208.4 KB
182 CDS

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whole genome shotgun sequence
NZ_ABCM01000010
206.8 KB
191 CDS

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whole genome shotgun sequence
NZ_ABCM01000011
202.3 KB
183 CDS

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whole genome shotgun sequence
NZ_ABCM01000012
184.6 KB
155 CDS

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whole genome shotgun sequence
NZ_ABCM01000013
153.6 KB
120 CDS

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whole genome shotgun sequence
NZ_ABCM01000014
144.3 KB
118 CDS

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whole genome shotgun sequence
NZ_ABCM01000015
141.6 KB
116 CDS

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whole genome shotgun sequence
NZ_ABCM01000016
137.4 KB
115 CDS

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whole genome shotgun sequence
NZ_ABCM01000017
132.3 KB
140 CDS

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whole genome shotgun sequence
NZ_ABCM01000018
117.1 KB
96 CDS

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whole genome shotgun sequence
NZ_ABCM01000019
114.9 KB
110 CDS

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whole genome shotgun sequence
NZ_ABCM01000020
105.2 KB
98 CDS

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whole genome shotgun sequence
NZ_ABCM01000021
104.6 KB
83 CDS

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whole genome shotgun sequence
NZ_ABCM01000022
104.1 KB
98 CDS

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whole genome shotgun sequence
NZ_ABCM01000023
84.0 KB
77 CDS

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whole genome shotgun sequence
NZ_ABCM01000024
79.3 KB
69 CDS

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whole genome shotgun sequence
NZ_ABCM01000025
79.0 KB
69 CDS

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whole genome shotgun sequence
NZ_ABCM01000026
72.5 KB
64 CDS

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whole genome shotgun sequence
NZ_ABCM01000027
47.3 KB
36 CDS

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whole genome shotgun sequence
NZ_ABCM01000028
38.4 KB
30 CDS

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whole genome shotgun sequence
NZ_ABCM01000029
34.2 KB
30 CDS

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whole genome shotgun sequence
NZ_ABCM01000030
31.3 KB
35 CDS

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whole genome shotgun sequence
NZ_ABCM01000031
30.2 KB
33 CDS

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whole genome shotgun sequence
NZ_ABCM01000032
29.9 KB
26 CDS

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whole genome shotgun sequence
NZ_ABCM01000033
26.9 KB
16 CDS

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whole genome shotgun sequence
NZ_ABCM01000034
26.6 KB
18 CDS

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whole genome shotgun sequence
NZ_ABCM01000035
25.0 KB
19 CDS

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whole genome shotgun sequence
NZ_ABCM01000036
23.3 KB
20 CDS

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whole genome shotgun sequence
NZ_ABCM01000037
20.2 KB
19 CDS

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whole genome shotgun sequence
NZ_ABCM01000038
13.5 KB
15 CDS

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whole genome shotgun sequence
NZ_ABCM01000039
12.7 KB
9 CDS

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whole genome shotgun sequence
NZ_ABCM01000040
12.5 KB
8 CDS

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whole genome shotgun sequence
NZ_ABCM01000041
11.2 KB
13 CDS

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whole genome shotgun sequence
NZ_ABCM01000042
9.1 KB
7 CDS

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whole genome shotgun sequence
NZ_ABCM01000043
5.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABCM01000044
4.3 KB
5 CDS

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whole genome shotgun sequence
NZ_ABCM01000045
1.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ABCM01000046
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABCM01000047
1.0 KB
2 CDS

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Taxonomy

External Links

Pedobacter sp. BAL39

Search Genome

Sequences

PubMed Search for Pedobacter sp. BAL39

Related Genomes