Peptoniphilus duerdenii ATCC BAA-1640

Baylor College of Medicine

Genome Size: 2.1 megabases, Released Date: Aug. 23, 2010 #20522

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig00001, whole genome shotgun sequence
NZ_AEEH01000001
869 bytes
1 CDS

Table view
Circular View
Artemis Viewer

contig00003, whole genome shotgun sequence
NZ_AEEH01000002
1.3 KB
2 CDS

Table view
Circular View
Artemis Viewer

contig00006, whole genome shotgun sequence
NZ_AEEH01000003
1.5 KB
1 CDS

Table view
Circular View
Artemis Viewer

contig00007, whole genome shotgun sequence
NZ_AEEH01000004
1.0 KB
0 CDS

Table view
Circular View
Artemis Viewer

contig00009, whole genome shotgun sequence
NZ_AEEH01000005
3.1 KB
0 CDS

Table view
Circular View
Artemis Viewer

contig00010, whole genome shotgun sequence
NZ_AEEH01000006
1.3 KB
0 CDS

Table view
Circular View
Artemis Viewer

contig00017, whole genome shotgun sequence
NZ_AEEH01000007
707 bytes
1 CDS

Table view
Circular View
Artemis Viewer

contig00019, whole genome shotgun sequence
NZ_AEEH01000008
933 bytes
0 CDS

Table view
Circular View
Artemis Viewer

contig00021, whole genome shotgun sequence
NZ_AEEH01000009
52.8 KB
55 CDS

Table view
Circular View
Artemis Viewer

contig00022, whole genome shotgun sequence
NZ_AEEH01000010
20.3 KB
22 CDS

Table view
Circular View
Artemis Viewer

contig00023, whole genome shotgun sequence
NZ_AEEH01000011
18.2 KB
16 CDS

Table view
Circular View
Artemis Viewer

contig00024, whole genome shotgun sequence
NZ_AEEH01000012
40.8 KB
24 CDS

Table view
Circular View
Artemis Viewer

contig00025, whole genome shotgun sequence
NZ_AEEH01000013
15.0 KB
14 CDS

Table view
Circular View
Artemis Viewer

contig00026, whole genome shotgun sequence
NZ_AEEH01000014
112.8 KB
119 CDS

Table view
Circular View
Artemis Viewer

contig00027, whole genome shotgun sequence
NZ_AEEH01000015
5.1 KB
4 CDS

Table view
Circular View
Artemis Viewer

contig00028, whole genome shotgun sequence
NZ_AEEH01000016
6.9 KB
9 CDS

Table view
Circular View
Artemis Viewer

contig00029, whole genome shotgun sequence
NZ_AEEH01000017
24.8 KB
26 CDS

Table view
Circular View
Artemis Viewer

contig00030, whole genome shotgun sequence
NZ_AEEH01000018
97.5 KB
102 CDS

Table view
Circular View
Artemis Viewer

contig00031, whole genome shotgun sequence
NZ_AEEH01000019
113.6 KB
123 CDS

Table view
Circular View
Artemis Viewer

contig00032, whole genome shotgun sequence
NZ_AEEH01000020
39.2 KB
39 CDS

Table view
Circular View
Artemis Viewer

contig00033, whole genome shotgun sequence
NZ_AEEH01000021
16.6 KB
8 CDS

Table view
Circular View
Artemis Viewer

contig00034, whole genome shotgun sequence
NZ_AEEH01000022
6.0 KB
5 CDS

Table view
Circular View
Artemis Viewer

contig00035, whole genome shotgun sequence
NZ_AEEH01000023
13.6 KB
18 CDS

Table view
Circular View
Artemis Viewer

contig00036, whole genome shotgun sequence
NZ_AEEH01000024
2.6 KB
1 CDS

Table view
Circular View
Artemis Viewer

contig00037, whole genome shotgun sequence
NZ_AEEH01000025
72.1 KB
73 CDS

Table view
Circular View
Artemis Viewer

contig00038, whole genome shotgun sequence
NZ_AEEH01000026
6.0 KB
11 CDS

Table view
Circular View
Artemis Viewer

contig00039, whole genome shotgun sequence
NZ_AEEH01000027
9.1 KB
8 CDS

Table view
Circular View
Artemis Viewer

contig00040, whole genome shotgun sequence
NZ_AEEH01000028
71.5 KB
69 CDS

Table view
Circular View
Artemis Viewer

contig00041, whole genome shotgun sequence
NZ_AEEH01000029
13.1 KB
17 CDS

Table view
Circular View
Artemis Viewer

contig00042, whole genome shotgun sequence
NZ_AEEH01000030
9.6 KB
9 CDS

Table view
Circular View
Artemis Viewer

contig00043, whole genome shotgun sequence
NZ_AEEH01000031
31.8 KB
30 CDS

Table view
Circular View
Artemis Viewer

contig00044, whole genome shotgun sequence
NZ_AEEH01000032
42.9 KB
28 CDS

Table view
Circular View
Artemis Viewer

contig00045, whole genome shotgun sequence
NZ_AEEH01000033
39.8 KB
37 CDS

Table view
Circular View
Artemis Viewer

contig00046, whole genome shotgun sequence
NZ_AEEH01000034
39.4 KB
33 CDS

Table view
Circular View
Artemis Viewer

contig00047, whole genome shotgun sequence
NZ_AEEH01000035
25.0 KB
25 CDS

Table view
Circular View
Artemis Viewer

contig00048, whole genome shotgun sequence
NZ_AEEH01000036
19.4 KB
17 CDS

Table view
Circular View
Artemis Viewer

contig00049, whole genome shotgun sequence
NZ_AEEH01000037
9.9 KB
11 CDS

Table view
Circular View
Artemis Viewer

contig00050, whole genome shotgun sequence
NZ_AEEH01000038
29.9 KB
18 CDS

Table view
Circular View
Artemis Viewer

contig00051, whole genome shotgun sequence
NZ_AEEH01000039
64.3 KB
68 CDS

Table view
Circular View
Artemis Viewer

contig00052, whole genome shotgun sequence
NZ_AEEH01000040
13.7 KB
11 CDS

Table view
Circular View
Artemis Viewer

contig00053, whole genome shotgun sequence
NZ_AEEH01000041
4.5 KB
5 CDS

Table view
Circular View
Artemis Viewer

contig00054, whole genome shotgun sequence
NZ_AEEH01000042
6.0 KB
5 CDS

Table view
Circular View
Artemis Viewer

contig00055, whole genome shotgun sequence
NZ_AEEH01000043
130.8 KB
130 CDS

Table view
Circular View
Artemis Viewer

contig00056, whole genome shotgun sequence
NZ_AEEH01000044
117.7 KB
115 CDS

Table view
Circular View
Artemis Viewer

contig00057, whole genome shotgun sequence
NZ_AEEH01000045
13.4 KB
8 CDS

Table view
Circular View
Artemis Viewer

contig00058, whole genome shotgun sequence
NZ_AEEH01000046
94.5 KB
94 CDS

Table view
Circular View
Artemis Viewer

contig00059, whole genome shotgun sequence
NZ_AEEH01000047
108.3 KB
118 CDS

Table view
Circular View
Artemis Viewer

contig00060, whole genome shotgun sequence
NZ_AEEH01000048
162.8 KB
177 CDS

Table view
Circular View
Artemis Viewer

contig00061, whole genome shotgun sequence
NZ_AEEH01000049
9.6 KB
7 CDS

Table view
Circular View
Artemis Viewer

contig00062, whole genome shotgun sequence
NZ_AEEH01000050
94.4 KB
79 CDS

Table view
Circular View
Artemis Viewer

contig00063, whole genome shotgun sequence
NZ_AEEH01000051
31.3 KB
21 CDS

Table view
Circular View
Artemis Viewer

contig00064, whole genome shotgun sequence
NZ_AEEH01000052
12.4 KB
11 CDS

Table view
Circular View
Artemis Viewer

contig00065, whole genome shotgun sequence
NZ_AEEH01000053
135.9 KB
142 CDS

Table view
Circular View
Artemis Viewer

contig00066, whole genome shotgun sequence
NZ_AEEH01000054
9.8 KB
10 CDS

Table view
Circular View
Artemis Viewer

contig00068, whole genome shotgun sequence
NZ_AEEH01000055
669 bytes
1 CDS

Table view
Circular View
Artemis Viewer

contig00076, whole genome shotgun sequence
NZ_AEEH01000056
629 bytes
0 CDS

Table view
Circular View
Artemis Viewer

contig00077, whole genome shotgun sequence
NZ_AEEH01000057
2.1 KB
2 CDS

Table view
Circular View
Artemis Viewer

contig00080, whole genome shotgun sequence
NZ_AEEH01000058
781 bytes
1 CDS

Table view
Circular View
Artemis Viewer

contig00082, whole genome shotgun sequence
NZ_AEEH01000059
1.7 KB
5 CDS

Table view
Circular View
Artemis Viewer

contig00099, whole genome shotgun sequence
NZ_AEEH01000060
565 bytes
0 CDS

Table view
Circular View
Artemis Viewer

contig00108, whole genome shotgun sequence
NZ_AEEH01000061
932 bytes
2 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Peptoniphilus duerdenii ATCC BAA-1640

Search Genome

Sequences

PubMed Search for Peptoniphilus duerdenii ATCC BAA-1640

Related Genomes